Variant report

Variant	rs2964195
Chromosome Location	chr5:57540643-57540644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57527499..57530106-chr5:57539853..57541635,2	MCF-7	breast:
2	chr5:57535441..57538302-chr5:57538781..57541164,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs13159047	1.00[YRI][hapmap]
rs13168414	1.00[YRI][hapmap]
rs1469090	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs151868	0.84[AFR][1000 genomes]
rs152010	1.00[YRI][hapmap]
rs154670	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs154671	0.84[AFR][1000 genomes]
rs154673	0.84[AFR][1000 genomes]
rs17709103	1.00[YRI][hapmap]
rs181745	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2052547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081087	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2216679	1.00[YRI][hapmap]
rs2434584	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs245282	0.84[AFR][1000 genomes]
rs245285	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs245287	0.84[AFR][1000 genomes]
rs245295	0.84[AFR][1000 genomes]
rs245296	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs245493	1.00[YRI][hapmap]
rs246114	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2910573	1.00[YRI][hapmap]
rs2910577	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2910592	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2910600	1.00[YRI][hapmap]
rs2910605	1.00[YRI][hapmap]
rs2964173	1.00[JPT][hapmap]
rs2964193	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2964200	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2964205	0.92[ASN][1000 genomes]
rs2964208	0.88[JPT][hapmap];0.90[AMR][1000 genomes]
rs2964209	0.90[AMR][1000 genomes]
rs37484	0.84[AFR][1000 genomes]
rs37485	0.84[AFR][1000 genomes]
rs37486	0.84[AFR][1000 genomes]
rs37487	0.87[ASN][1000 genomes]
rs37488	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs37492	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs37516	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs37523	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs37526	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs37527	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs37528	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs37533	0.81[AFR][1000 genomes]
rs37536	0.84[AFR][1000 genomes]
rs40209	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs40210	0.84[AFR][1000 genomes]
rs41384	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs42963	0.92[ASN][1000 genomes]
rs989579	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
2	chr5:57534800-57555200	Weak transcription	Left Ventricle	heart
3	chr5:57535400-57540800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:57536200-57541400	Weak transcription	Right Atrium	heart
5	chr5:57536200-57542200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:57536400-57540800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:57536600-57544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:57536800-57542200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:57537400-57541800	Weak transcription	NHDF-Ad	bronchial
10	chr5:57537400-57542200	Weak transcription	Osteobl	bone
11	chr5:57537600-57542200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:57537600-57542200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:57537600-57542200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:57537600-57542400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:57537600-57542400	Weak transcription	NHLF	lung
16	chr5:57537600-57542600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:57537800-57540800	Weak transcription	A549	lung
18	chr5:57537800-57541000	Enhancers	HUVEC	blood vessel
19	chr5:57537800-57542200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:57537800-57542200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:57538000-57540800	Weak transcription	Hela-S3	cervix
22	chr5:57540200-57540800	Enhancers	Adipose Nuclei	Adipose
23	chr5:57540200-57541600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr5:57540400-57540800	Enhancers	Psoas Muscle	Psoas
25	chr5:57540400-57544200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:57540600-57541000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:57540600-57541200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:57540600-57541600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr5:57540600-57541800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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