Variant report

Variant	rs181745
Chromosome Location	chr5:57636031-57636032
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57635868..57638066-chr5:57754856..57757092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10513142	0.81[AFR][1000 genomes]
rs13159047	1.00[YRI][hapmap]
rs13168414	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap]
rs1469090	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs151868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs152010	1.00[YRI][hapmap]
rs154670	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs154671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154673	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709103	0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs1981838	1.00[ASW][hapmap]
rs2052547	0.84[AFR][1000 genomes]
rs2081087	1.00[AFR][1000 genomes]
rs2216678	0.84[AFR][1000 genomes]
rs2216679	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2434584	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs245282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245285	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs245287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245296	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs245493	0.81[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs246114	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs27210	0.81[AFR][1000 genomes]
rs27211	0.81[AFR][1000 genomes]
rs27840	0.81[AFR][1000 genomes]
rs2910573	1.00[YRI][hapmap]
rs2910577	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2910592	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2910600	1.00[ASW][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2910601	1.00[ASW][hapmap]
rs2910605	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2964193	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2964195	0.84[AFR][1000 genomes]
rs2964200	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2964205	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35263833	0.81[AFR][1000 genomes]
rs37484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37486	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs37488	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs37492	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs37516	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs37523	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs37526	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs37527	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs37528	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs37533	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs37536	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs40209	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs40210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41384	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs42963	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs58174847	0.81[AFR][1000 genomes]
rs989579	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs181745	BEND6	trans	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57635600-57637400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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