Variant report

Variant	rs154673
Chromosome Location	chr5:57620573-57620574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57619632..57622080-chr5:57627168..57629517,2	K562	blood:
2	chr5:57620445..57622080-chr5:57625868..57628668,2	K562	blood:
3	chr5:57620555..57622771-chr5:57753683..57755944,2	MCF-7	breast:
4	chr5:57618594..57622607-chr5:57622737..57625400,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10513142	0.81[AFR][1000 genomes]
rs1469090	1.00[AFR][1000 genomes]
rs151868	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154670	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs154671	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181745	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052547	0.84[AFR][1000 genomes]
rs2081087	1.00[AFR][1000 genomes]
rs2216678	0.84[AFR][1000 genomes]
rs2216679	0.84[AFR][1000 genomes]
rs2434584	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs245282	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245285	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs245287	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245295	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245296	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs246114	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs27210	0.81[AFR][1000 genomes]
rs27211	0.81[AFR][1000 genomes]
rs27840	0.81[AFR][1000 genomes]
rs2910577	1.00[AFR][1000 genomes]
rs2910592	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2910600	0.84[AFR][1000 genomes]
rs2910605	0.84[AFR][1000 genomes]
rs2964193	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2964195	0.84[AFR][1000 genomes]
rs2964200	1.00[AFR][1000 genomes]
rs2964205	0.92[AFR][1000 genomes]
rs35263833	0.81[AFR][1000 genomes]
rs37484	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37485	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37486	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs37488	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs37492	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs37516	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs37523	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs37526	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs37527	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs37528	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs37533	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs37536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs40209	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs40210	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41384	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs42963	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs58174847	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57617600-57622800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:57618800-57626000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:57618800-57626800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:57619000-57621800	Weak transcription	NHEK	skin
5	chr5:57619000-57626400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:57619800-57622000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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