Variant report

Variant	rs2216679
Chromosome Location	chr5:57454775-57454776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57453268..57455483-chr5:57754539..57756210,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1035475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13168414	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13187650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469090	0.84[AFR][1000 genomes]
rs1473200	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151868	0.84[AFR][1000 genomes]
rs152010	1.00[YRI][hapmap]
rs154670	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs154671	0.84[AFR][1000 genomes]
rs154673	0.84[AFR][1000 genomes]
rs1549243	1.00[ASN][1000 genomes]
rs181745	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1862539	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1981838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981839	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081087	0.84[AFR][1000 genomes]
rs2194195	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216683	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2216685	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2434584	0.84[AFR][1000 genomes]
rs245282	0.84[AFR][1000 genomes]
rs245285	1.00[YRI][hapmap]
rs245287	0.84[AFR][1000 genomes]
rs245295	0.84[AFR][1000 genomes]
rs245493	1.00[YRI][hapmap]
rs2860439	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910567	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2910569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910571	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910573	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2910577	0.84[AFR][1000 genomes]
rs2910592	0.88[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2910593	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910612	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2961999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962021	1.00[ASN][1000 genomes]
rs2962024	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2964184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964193	0.84[AFR][1000 genomes]
rs2964200	0.84[AFR][1000 genomes]
rs34969852	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs37484	0.84[AFR][1000 genomes]
rs37485	0.84[AFR][1000 genomes]
rs37486	0.84[AFR][1000 genomes]
rs37488	0.84[AFR][1000 genomes]
rs37492	0.88[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs37516	0.84[AFR][1000 genomes]
rs37523	0.84[AFR][1000 genomes]
rs37526	0.84[AFR][1000 genomes]
rs37527	0.84[AFR][1000 genomes]
rs37528	0.84[AFR][1000 genomes]
rs37536	0.84[AFR][1000 genomes]
rs40209	0.84[AFR][1000 genomes]
rs40210	0.84[AFR][1000 genomes]
rs41384	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs988697	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989579	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57447200-57457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:57453000-57457000	Weak transcription	Pancreas	Pancrea
3	chr5:57453400-57455600	Weak transcription	Adipose Nuclei	Adipose

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