Variant report

Variant	rs1981839
Chromosome Location	chr5:57451111-57451112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1035475	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472035	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472036	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13168414	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13187650	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473200	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549243	1.00[ASN][1000 genomes]
rs1862539	1.00[ASN][1000 genomes]
rs1981838	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194195	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216678	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216679	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216683	1.00[ASN][1000 genomes]
rs2216685	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860439	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910569	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910571	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910573	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2910593	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910594	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910600	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910601	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910605	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910611	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910612	0.94[ASN][1000 genomes]
rs2961999	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962021	1.00[ASN][1000 genomes]
rs2962024	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2964184	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34969852	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs988697	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989579	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57445800-57452000	Weak transcription	NHDF-Ad	bronchial
2	chr5:57446000-57451400	Weak transcription	HSMM	muscle
3	chr5:57446600-57451800	Weak transcription	HSMMtube	muscle
4	chr5:57447200-57457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:57449400-57452200	Weak transcription	A549	lung
6	chr5:57450800-57452000	Enhancers	Brain Germinal Matrix	brain
7	chr5:57451000-57451400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:57451000-57452000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:57451000-57454000	Enhancers	Fetal Brain Male	brain
10	chr5:57451000-57454200	Enhancers	Cortex derived primary cultured neurospheres	brain

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