Variant report

Variant	rs2910571
Chromosome Location	chr5:57449100-57449101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57445014..57449172-chr5:57753640..57757060,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1035475	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10472035	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10472036	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13168414	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13187650	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1473200	0.91[ASN][1000 genomes]
rs1549243	0.91[ASN][1000 genomes]
rs1862539	0.91[ASN][1000 genomes]
rs1981838	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1981839	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2194195	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216678	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216679	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2216683	0.91[ASN][1000 genomes]
rs2216685	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2860439	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910569	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910573	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2910593	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910594	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910600	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910601	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910605	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910611	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910612	0.86[ASN][1000 genomes]
rs2961999	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2962021	0.91[ASN][1000 genomes]
rs2962024	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2964184	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34969852	0.86[AFR][1000 genomes]
rs988697	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain
2	chr5:57445800-57452000	Weak transcription	NHDF-Ad	bronchial
3	chr5:57446000-57451400	Weak transcription	HSMM	muscle
4	chr5:57446600-57451800	Weak transcription	HSMMtube	muscle
5	chr5:57447200-57457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:57448800-57449400	Active TSS	A549	lung
7	chr5:57449000-57449200	Enhancers	Stomach Mucosa	stomach

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