Variant report

Variant	rs2962024
Chromosome Location	chr5:57464338-57464339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57463906..57466759-chr5:57754319..57757066,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1035475	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10472035	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10472036	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13168414	0.83[EUR][1000 genomes]
rs13187650	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1473200	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1549243	0.87[ASN][1000 genomes]
rs1862539	0.87[ASN][1000 genomes]
rs1981838	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1981839	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2194195	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2216678	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2216679	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2216683	0.87[ASN][1000 genomes]
rs2216685	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2860439	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910569	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910571	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2910573	0.84[EUR][1000 genomes]
rs2910593	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910594	1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910600	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910601	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910605	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910611	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910612	0.82[ASN][1000 genomes]
rs2961999	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2962021	0.87[ASN][1000 genomes]
rs2964184	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34969852	0.81[EUR][1000 genomes]
rs988697	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs989579	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57464000-57464400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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