Variant report

Variant	rs34969852
Chromosome Location	chr5:57442671-57442672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57441586..57443631-chr5:57755468..57757394,2	MCF-7	breast:
2	chr5:57438909..57443039-chr5:57754693..57757047,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1035475	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10472035	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10472036	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13168414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173426	0.83[EUR][1000 genomes]
rs13187650	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1473200	0.87[ASN][1000 genomes]
rs1549243	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1862539	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1981838	0.87[ASN][1000 genomes]
rs1981839	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2194195	0.87[ASN][1000 genomes]
rs2216678	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2216679	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2216683	0.87[ASN][1000 genomes]
rs2216685	0.87[ASN][1000 genomes]
rs2860439	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910569	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910571	0.86[AFR][1000 genomes]
rs2910573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910593	0.87[ASN][1000 genomes]
rs2910594	0.87[ASN][1000 genomes]
rs2910600	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2910601	0.87[ASN][1000 genomes]
rs2910605	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2910611	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910612	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2961999	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2962021	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2962024	0.81[EUR][1000 genomes]
rs2964184	0.87[ASN][1000 genomes]
rs988697	0.87[ASN][1000 genomes]
rs989579	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain

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