Variant report

Variant	rs13168414
Chromosome Location	chr5:57446439-57446440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57445014..57449172-chr5:57753640..57757060,3	MCF-7	breast:
2	chr5:57444209..57446462-chr5:57534291..57536169,2	K562	blood:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1035475	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10472035	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10472036	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13173426	0.82[EUR][1000 genomes]
rs13187650	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1473200	0.87[ASN][1000 genomes]
rs152010	1.00[YRI][hapmap]
rs154670	1.00[YRI][hapmap]
rs1549243	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs181745	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap]
rs1862539	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1981838	1.00[ASW][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.87[ASN][1000 genomes]
rs1981839	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2194195	0.87[ASN][1000 genomes]
rs2216678	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2216679	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2216683	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2216685	0.87[ASN][1000 genomes]
rs245285	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs245493	1.00[YRI][hapmap]
rs2860439	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910567	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2910569	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910571	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2910573	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910592	1.00[YRI][hapmap]
rs2910593	0.87[ASN][1000 genomes]
rs2910594	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2910600	1.00[ASW][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2910601	1.00[ASW][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.87[ASN][1000 genomes]
rs2910605	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2910611	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2910612	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2961999	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2962021	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2962024	0.83[EUR][1000 genomes]
rs2964184	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs34969852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37492	1.00[YRI][hapmap]
rs41384	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap]
rs988697	0.87[ASN][1000 genomes]
rs989579	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain
2	chr5:57444000-57446600	Enhancers	HSMMtube	muscle
3	chr5:57445600-57448800	Weak transcription	A549	lung
4	chr5:57445800-57452000	Weak transcription	NHDF-Ad	bronchial
5	chr5:57446000-57451400	Weak transcription	HSMM	muscle
6	chr5:57446200-57446600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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