Variant report

Variant	rs2962021
Chromosome Location	chr5:57464994-57464995
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57463906..57466759-chr5:57754319..57757066,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1035475	1.00[ASN][1000 genomes]
rs10472035	1.00[ASN][1000 genomes]
rs10472036	1.00[ASN][1000 genomes]
rs13155421	1.00[AFR][1000 genomes]
rs13168168	1.00[AFR][1000 genomes]
rs13168414	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13170721	1.00[AFR][1000 genomes]
rs13185712	1.00[AFR][1000 genomes]
rs13187650	1.00[ASN][1000 genomes]
rs1473200	1.00[ASN][1000 genomes]
rs1549243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16887923	1.00[AFR][1000 genomes]
rs17369645	1.00[AFR][1000 genomes]
rs17433525	1.00[AFR][1000 genomes]
rs17750857	1.00[AFR][1000 genomes]
rs17750946	1.00[AFR][1000 genomes]
rs17751024	1.00[AFR][1000 genomes]
rs1862539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981838	1.00[ASN][1000 genomes]
rs1981839	1.00[ASN][1000 genomes]
rs2194195	1.00[ASN][1000 genomes]
rs2216678	1.00[ASN][1000 genomes]
rs2216679	1.00[ASN][1000 genomes]
rs2216683	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216685	1.00[ASN][1000 genomes]
rs2860439	1.00[ASN][1000 genomes]
rs2910569	1.00[ASN][1000 genomes]
rs2910571	0.91[ASN][1000 genomes]
rs2910573	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2910593	1.00[ASN][1000 genomes]
rs2910594	1.00[ASN][1000 genomes]
rs2910600	1.00[ASN][1000 genomes]
rs2910601	1.00[ASN][1000 genomes]
rs2910605	1.00[ASN][1000 genomes]
rs2910611	1.00[ASN][1000 genomes]
rs2910612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2961999	1.00[ASN][1000 genomes]
rs2962024	0.87[ASN][1000 genomes]
rs2964173	0.89[EUR][1000 genomes]
rs2964174	0.82[EUR][1000 genomes]
rs2964184	1.00[ASN][1000 genomes]
rs2964208	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2964209	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34357926	1.00[AFR][1000 genomes]
rs34969852	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35132533	1.00[AFR][1000 genomes]
rs35629187	1.00[AFR][1000 genomes]
rs4340877	1.00[AFR][1000 genomes]
rs58405952	1.00[AFR][1000 genomes]
rs71624189	1.00[AFR][1000 genomes]
rs71624191	1.00[AFR][1000 genomes]
rs988697	1.00[ASN][1000 genomes]
rs989579	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57464400-57465800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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