Variant report

Variant	rs17750946
Chromosome Location	chr5:57363519-57363520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57362240..57365974-chr5:57753228..57757443,6	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLK2-2	chr5:57362439-57363721	XLOC_004836
2	lnc-PLK2-2	chr5:57363274-57363721	NONHSAT101594

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10461644	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10461645	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10491418	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10491419	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1125324	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13152942	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13153091	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13155421	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159010	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13159117	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13160117	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13164786	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13168168	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13170721	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176924	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13177963	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13178678	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13179148	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13181962	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13185082	0.94[EUR][1000 genomes]
rs13185712	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13186152	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13186306	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13187466	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13190103	0.88[EUR][1000 genomes]
rs1549243	1.00[AFR][1000 genomes]
rs1549244	0.87[EUR][1000 genomes]
rs1565335	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16887923	1.00[AFR][1000 genomes]
rs17367557	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17367866	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17368537	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368635	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368691	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368889	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368931	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368965	0.88[EUR][1000 genomes]
rs17369063	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17369443	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17369506	0.94[EUR][1000 genomes]
rs17369617	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17369645	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17370357	0.87[EUR][1000 genomes]
rs17433232	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433281	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433351	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433413	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433449	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433525	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17433602	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433644	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17434105	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17434147	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17434756	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17434985	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17435116	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17750857	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750970	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17751024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1862539	1.00[AFR][1000 genomes]
rs2130362	0.83[AMR][1000 genomes]
rs2409072	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2898084	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2910612	1.00[AFR][1000 genomes]
rs2962021	1.00[AFR][1000 genomes]
rs2964208	1.00[AFR][1000 genomes]
rs2964209	1.00[AFR][1000 genomes]
rs34028264	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34088369	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34140627	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34145550	0.88[EUR][1000 genomes]
rs34183980	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34283705	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34357926	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34362402	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34393614	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34469485	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34486088	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34540977	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34558865	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34561456	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34563650	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34668052	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34728348	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34739332	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34839607	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34900511	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34911212	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35020899	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35102344	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35132533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288659	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35474010	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35480511	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35493107	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35559784	0.88[EUR][1000 genomes]
rs35585983	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35629187	1.00[AFR][1000 genomes]
rs35637947	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35699974	0.88[EUR][1000 genomes]
rs36003001	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36056213	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36108192	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36118761	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4328995	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4340877	1.00[AFR][1000 genomes]
rs58405952	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71624184	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71624185	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71624189	1.00[AFR][1000 genomes]
rs71624191	1.00[AFR][1000 genomes]
rs7734877	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7735526	0.88[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57357400-57368200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57360200-57368400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:57361400-57367600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:57363000-57368000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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