Variant report

Variant	rs2130362
Chromosome Location	chr5:57372544-57372545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57370978..57374867-chr5:57746378..57750088,5	MCF-7	breast:
2	chr5:57364074..57376813-chr5:57753679..57758569,26	MCF-7	breast:
3	chr5:57366155..57368780-chr5:57371961..57374011,3	MCF-7	breast:
4	chr5:57364843..57369662-chr5:57370174..57374836,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238899	Chromatin interaction
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10461644	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10461645	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10491418	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10491419	1.00[AMR][1000 genomes]
rs1125324	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152942	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13153091	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13159010	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13159117	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13160117	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13164786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176924	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13177963	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13178678	0.89[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13179148	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13181962	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13185082	0.85[AMR][1000 genomes]
rs13185712	0.91[AMR][1000 genomes]
rs13186152	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13186306	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13187466	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13190103	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1549244	0.85[CEU][hapmap];1.00[LWK][hapmap]
rs1565335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367557	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17367866	0.85[CEU][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17368537	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17368635	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17368691	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17368889	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17368931	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17368965	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17369063	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17369443	0.85[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17369506	0.85[AMR][1000 genomes]
rs17369617	0.85[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17369645	0.85[CEU][hapmap];0.91[AMR][1000 genomes]
rs17433232	0.85[CEU][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17433281	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17433351	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17433413	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17433449	0.85[CEU][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17433525	0.85[CEU][hapmap];0.91[AMR][1000 genomes]
rs17433602	1.00[LWK][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17433644	0.85[CEU][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17434105	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17434147	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17434756	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17434985	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17435116	0.85[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17750946	0.83[AMR][1000 genomes]
rs17750970	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17751024	0.91[AMR][1000 genomes]
rs2409072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2898084	1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34028264	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34088369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34140627	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34145550	0.85[EUR][1000 genomes]
rs34183980	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34283705	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34357926	0.91[AMR][1000 genomes]
rs34362402	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34393614	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34469485	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34486088	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34540977	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34558865	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34561456	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34563650	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34668052	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34728348	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34739332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34839607	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34900511	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34911212	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35020899	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35102344	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35132533	0.83[AMR][1000 genomes]
rs35288659	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35474010	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35480511	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35493107	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35559784	0.85[EUR][1000 genomes]
rs35585983	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35637947	0.91[AMR][1000 genomes]
rs35699974	0.85[EUR][1000 genomes]
rs36003001	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36056213	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36118761	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4328995	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58405952	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71624184	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71624185	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7734877	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7735526	0.85[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57367800-57372600	Weak transcription	Left Ventricle	heart
2	chr5:57368600-57372800	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:57368600-57372800	Weak transcription	Right Ventricle	heart
4	chr5:57368600-57373400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:57368600-57373600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:57368600-57373600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:57368600-57376200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:57368800-57373200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:57368800-57373400	Weak transcription	Brain Germinal Matrix	brain
10	chr5:57369000-57373200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:57369400-57372800	Weak transcription	Ovary	ovary
12	chr5:57369400-57374800	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:57369400-57375200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:57370400-57373400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:57371200-57372600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:57371200-57373200	Weak transcription	A549	lung
17	chr5:57371400-57374400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr5:57371800-57373400	Weak transcription	Fetal Lung	lung
19	chr5:57372000-57373200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr5:57372200-57372600	Weak transcription	Fetal Heart	heart
21	chr5:57372400-57373000	Enhancers	Right Atrium	heart

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