Variant report

Variant	rs58405952
Chromosome Location	chr5:57376563-57376564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:57363854..57365675-chr5:57374020..57376957,2	MCF-7	breast:
2	chr5:57376057..57378854-chr5:57754503..57757387,4	MCF-7	breast:
3	chr5:57375298..57377194-chr5:57746717..57748968,2	MCF-7	breast:
4	chr5:57373053..57378694-chr5:57379597..57383884,7	MCF-7	breast:
5	chr5:57364074..57376813-chr5:57753679..57758569,26	MCF-7	breast:
6	chr5:57373589..57376997-chr5:57379923..57382624,3	MCF-7	breast:
7	chr5:57375652..57378198-chr5:57388610..57391514,3	MCF-7	breast:
8	chr5:57157354..57158911-chr5:57376200..57378851,2	MCF-7	breast:
9	chr5:57376378..57378966-chr5:57481902..57484243,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10461644	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10461645	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10491418	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10491419	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1125324	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13152942	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13153091	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13155421	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13159010	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13159117	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13160117	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13164786	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13168168	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13170721	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13176924	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13177963	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13178678	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13179148	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13181962	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13185082	0.98[EUR][1000 genomes]
rs13185712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13186152	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13186306	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13187466	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13190103	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1549243	1.00[AFR][1000 genomes]
rs1549244	0.91[EUR][1000 genomes]
rs1565335	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16887923	1.00[AFR][1000 genomes]
rs17367557	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17367866	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17368537	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17368635	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17368691	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17368889	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17368931	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17368965	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17369063	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17369443	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17369506	0.98[EUR][1000 genomes]
rs17369617	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17369645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17370357	0.91[EUR][1000 genomes]
rs17433232	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17433281	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17433351	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17433413	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17433449	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17433525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17433602	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17433644	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17434105	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17434147	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17434756	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17434985	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17435116	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17750857	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17750946	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17750970	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17751024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1862539	1.00[AFR][1000 genomes]
rs2130362	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2409072	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2898084	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2910612	1.00[AFR][1000 genomes]
rs2962021	1.00[AFR][1000 genomes]
rs2964208	1.00[AFR][1000 genomes]
rs2964209	1.00[AFR][1000 genomes]
rs34028264	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34088369	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34140627	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34145550	0.91[EUR][1000 genomes]
rs34183980	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34283705	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34357926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34362402	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34393614	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34469485	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34486088	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34540977	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34558865	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34561456	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34563650	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34668052	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34728348	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34739332	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34839607	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34900511	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34911212	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35020899	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35102344	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35132533	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35288659	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35474010	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35480511	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35493107	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35559784	0.91[EUR][1000 genomes]
rs35585983	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35629187	1.00[AFR][1000 genomes]
rs35637947	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35699974	0.91[EUR][1000 genomes]
rs36003001	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36056213	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36108192	0.85[EUR][1000 genomes]
rs36118761	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4328995	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4340877	1.00[AFR][1000 genomes]
rs71624184	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71624185	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71624189	1.00[AFR][1000 genomes]
rs71624191	1.00[AFR][1000 genomes]
rs7734877	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7735526	0.91[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57373000-57378400	Weak transcription	Right Atrium	heart
2	chr5:57374000-57383800	Weak transcription	Ovary	ovary
3	chr5:57375000-57382800	Weak transcription	Fetal Lung	lung
4	chr5:57375200-57376800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:57375800-57376800	Enhancers	A549	lung
6	chr5:57376000-57377000	Enhancers	Hela-S3	cervix
7	chr5:57376000-57377000	Enhancers	HMEC	breast
8	chr5:57376000-57377200	Enhancers	Placenta	Placenta
9	chr5:57376200-57376600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:57376200-57377200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:57376200-57377200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:57376200-57377200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr5:57376200-57377200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:57376200-57378400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:57376200-57378600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:57376400-57376800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:57376400-57377000	Enhancers	HSMMtube	muscle
18	chr5:57376400-57377200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:57376400-57377400	Enhancers	Fetal Muscle Leg	muscle

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