Variant report

Variant	rs36108192
Chromosome Location	chr5:57341158-57341159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57338299..57341350-chr5:57344603..57346493,3	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10491418	0.83[EUR][1000 genomes]
rs10491419	0.83[EUR][1000 genomes]
rs13155421	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13159010	0.83[EUR][1000 genomes]
rs13159117	0.83[EUR][1000 genomes]
rs13168168	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13170721	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13178678	0.82[EUR][1000 genomes]
rs13179148	0.83[EUR][1000 genomes]
rs13181962	0.83[EUR][1000 genomes]
rs13185082	0.83[EUR][1000 genomes]
rs13185712	0.89[EUR][1000 genomes]
rs13186152	0.83[EUR][1000 genomes]
rs13186306	0.83[EUR][1000 genomes]
rs13187466	0.83[EUR][1000 genomes]
rs17368537	0.83[EUR][1000 genomes]
rs17368635	0.83[EUR][1000 genomes]
rs17368691	0.83[EUR][1000 genomes]
rs17368889	0.83[EUR][1000 genomes]
rs17368931	0.83[EUR][1000 genomes]
rs17369063	0.83[EUR][1000 genomes]
rs17369443	0.83[EUR][1000 genomes]
rs17369506	0.83[EUR][1000 genomes]
rs17369617	0.83[EUR][1000 genomes]
rs17369645	0.83[EUR][1000 genomes]
rs17433525	0.83[EUR][1000 genomes]
rs17434105	0.80[EUR][1000 genomes]
rs17434147	0.83[EUR][1000 genomes]
rs17434756	0.83[EUR][1000 genomes]
rs17434985	0.83[EUR][1000 genomes]
rs17435116	0.83[EUR][1000 genomes]
rs17750857	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17750946	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17750970	0.82[EUR][1000 genomes]
rs17751024	0.89[EUR][1000 genomes]
rs2409072	0.82[EUR][1000 genomes]
rs2898084	0.82[EUR][1000 genomes]
rs34028264	0.83[EUR][1000 genomes]
rs34357926	0.83[EUR][1000 genomes]
rs34469485	0.83[EUR][1000 genomes]
rs34540977	0.82[EUR][1000 genomes]
rs34668052	0.83[EUR][1000 genomes]
rs34739332	0.82[EUR][1000 genomes]
rs35132533	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35288659	0.83[EUR][1000 genomes]
rs35585983	0.83[EUR][1000 genomes]
rs35637947	0.83[EUR][1000 genomes]
rs36003001	0.83[EUR][1000 genomes]
rs36056213	0.83[EUR][1000 genomes]
rs36118761	0.83[EUR][1000 genomes]
rs4328995	0.83[EUR][1000 genomes]
rs58405952	0.85[EUR][1000 genomes]
rs71624185	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817904	chr5:57277522-57359476	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1829717	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1830976	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1837615	chr5:57277522-57359476	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1846984	chr5:57277522-57359476	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1850205	chr5:57277522-57359476	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv508357	chr5:57304472-57360187	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv598229	chr5:57309072-57345166	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv4840	chr5:57311002-57352746	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2763867	chr5:57314217-57360670	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1033110	chr5:57326015-57342120	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv1792664	chr5:57326015-57342152	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv1020020	chr5:57326015-57342152	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	nsv598236	chr5:57326833-57343495	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv1827589	chr5:57326833-57345166	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv1846174	chr5:57326833-57345166	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1017677	chr5:57329744-57342152	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57339400-57344200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:57340400-57342000	Weak transcription	K562	blood

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