Variant report

Variant	rs17369645
Chromosome Location	chr5:57419759-57419760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr5:57419679-57419763	NB4	blood:	n/a	chr5:57419720-57419727 chr5:57419720-57419729

Variant related genes	Relation type
ENSG00000248132	TF binding region

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10461644	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10461645	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10491418	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491419	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1125324	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13152942	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13153091	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13155421	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13159010	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159117	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160117	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13164786	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13168168	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13170721	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13176924	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13177963	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13178678	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13179148	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181962	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13186152	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186306	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187466	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13190103	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1549243	1.00[AFR][1000 genomes]
rs1549244	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1565335	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16887923	1.00[AFR][1000 genomes]
rs17367557	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17367866	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17368537	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368635	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368691	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368889	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17368931	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368965	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369063	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369506	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17369617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17370357	0.93[EUR][1000 genomes]
rs17433232	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17433281	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17433351	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17433413	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17433449	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17433525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17433602	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17433644	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17434105	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17434147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17434756	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17434985	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17435116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750857	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17750946	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17750970	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17751024	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1862539	1.00[AFR][1000 genomes]
rs2130362	0.85[CEU][hapmap];0.91[AMR][1000 genomes]
rs2409072	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2898084	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2910612	1.00[AFR][1000 genomes]
rs2962021	1.00[AFR][1000 genomes]
rs2964208	1.00[AFR][1000 genomes]
rs2964209	1.00[AFR][1000 genomes]
rs34028264	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34088369	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34140627	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34145550	0.93[EUR][1000 genomes]
rs34183980	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34283705	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34357926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34362402	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34393614	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34469485	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34486088	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34540977	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34558865	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34561456	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34563650	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34668052	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34728348	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34739332	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34839607	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34900511	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34911212	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35020899	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35102344	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35132533	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35288659	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35474010	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35480511	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35493107	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35559784	0.93[EUR][1000 genomes]
rs35585983	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35629187	1.00[AFR][1000 genomes]
rs35637947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35699974	0.93[EUR][1000 genomes]
rs36003001	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36056213	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36108192	0.83[EUR][1000 genomes]
rs36118761	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4328995	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4340877	1.00[AFR][1000 genomes]
rs58405952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71624184	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71624185	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71624189	1.00[AFR][1000 genomes]
rs71624191	1.00[AFR][1000 genomes]
rs7734877	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7735526	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57412600-57422000	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:57414600-57421400	Weak transcription	A549	lung
3	chr5:57415800-57422200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:57418200-57420000	Enhancers	Fetal Brain Female	brain
5	chr5:57418800-57419800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:57418800-57420200	Enhancers	Fetal Heart	heart
7	chr5:57418800-57420600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr5:57418800-57423200	Weak transcription	Psoas Muscle	Psoas
9	chr5:57419000-57422000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:57419000-57422800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:57419000-57423000	Weak transcription	Brain Angular Gyrus	brain
12	chr5:57419400-57422400	Weak transcription	Brain Germinal Matrix	brain
13	chr5:57419400-57422800	Weak transcription	Fetal Lung	lung
14	chr5:57419400-57422800	Weak transcription	HSMM	muscle
15	chr5:57419400-57423000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:57419600-57422000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:57419600-57422000	Weak transcription	Pancreas	Pancrea
18	chr5:57419600-57422600	Weak transcription	HSMMtube	muscle
19	chr5:57419600-57423200	Weak transcription	Aorta	Aorta
20	chr5:57419600-57423600	Weak transcription	Fetal Brain Male	brain

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