Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13155421	1.00[AFR][1000 genomes]
rs13168168	1.00[AFR][1000 genomes]
rs13170721	1.00[AFR][1000 genomes]
rs13185712	1.00[AFR][1000 genomes]
rs1549243	1.00[AFR][1000 genomes]
rs16887923	1.00[AFR][1000 genomes]
rs17369645	1.00[AFR][1000 genomes]
rs17433525	1.00[AFR][1000 genomes]
rs17750857	1.00[AFR][1000 genomes]
rs17750946	1.00[AFR][1000 genomes]
rs17751024	1.00[AFR][1000 genomes]
rs1862539	1.00[AFR][1000 genomes]
rs2910612	1.00[AFR][1000 genomes]
rs2962021	1.00[AFR][1000 genomes]
rs2964208	1.00[AFR][1000 genomes]
rs2964209	1.00[AFR][1000 genomes]
rs34357926	1.00[AFR][1000 genomes]
rs35132533	1.00[AFR][1000 genomes]
rs35629187	1.00[AFR][1000 genomes]
rs4340877	1.00[AFR][1000 genomes]
rs58405952	1.00[AFR][1000 genomes]
rs71624189	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969959	chr5:57486620-57495174	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57487800-57497600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57493600-57494200	Enhancers	Adipose Nuclei	Adipose
3	chr5:57493600-57494400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:57493800-57496200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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