Variant report
| Variant | rs16887923 |
|---|---|
| Chromosome Location | chr5:57474315-57474316 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:57471619..57474921-chr5:57753205..57755794,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs13155421 | 1.00[AFR][1000 genomes] |
| rs13168168 | 1.00[AFR][1000 genomes] |
| rs13170721 | 1.00[AFR][1000 genomes] |
| rs13185712 | 1.00[AFR][1000 genomes] |
| rs1549243 | 1.00[AFR][1000 genomes] |
| rs17369645 | 1.00[AFR][1000 genomes] |
| rs17433525 | 1.00[AFR][1000 genomes] |
| rs17750857 | 1.00[AFR][1000 genomes] |
| rs17750946 | 1.00[AFR][1000 genomes] |
| rs17751024 | 1.00[AFR][1000 genomes] |
| rs1862539 | 1.00[AFR][1000 genomes] |
| rs2910612 | 1.00[AFR][1000 genomes] |
| rs2962021 | 1.00[AFR][1000 genomes] |
| rs2964208 | 1.00[AFR][1000 genomes] |
| rs2964209 | 1.00[AFR][1000 genomes] |
| rs34357926 | 1.00[AFR][1000 genomes] |
| rs35132533 | 1.00[AFR][1000 genomes] |
| rs35629187 | 1.00[AFR][1000 genomes] |
| rs4340877 | 1.00[AFR][1000 genomes] |
| rs58405952 | 1.00[AFR][1000 genomes] |
| rs71624189 | 1.00[AFR][1000 genomes] |
| rs71624191 | 1.00[AFR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
