Variant report

Variant	rs35132533
Chromosome Location	chr5:57365311-57365312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr5:57365203-57366017	MCF-7	breast:	n/a	n/a
2	GATA3	chr5:57365188-57366489	MCF-7	breast:	n/a	chr5:57365565-57365572 chr5:57365563-57365572
3	MYC	chr5:57365093-57365329	MCF-7	breast:	n/a	n/a
4	POLR2A	chr5:57364913-57365534	MCF-7	breast:	n/a	n/a
5	MYC	chr5:57365109-57365498	MCF-7	breast:	n/a	n/a
6	GATA3	chr5:57365229-57366133	MCF-7	breast:	n/a	chr5:57365565-57365572 chr5:57365563-57365572
7	RAD21	chr5:57365101-57366401	MCF-7	breast:	n/a	n/a
8	POLR2A	chr5:57365041-57365497	MCF-7	breast:	n/a	n/a
9	TCF12	chr5:57364981-57366450	MCF-7	breast:	n/a	chr5:57365831-57365839 chr5:57365894-57365903
10	EP300	chr5:57365291-57366351	T-47D	breast:	n/a	chr5:57365914-57365924
11	SIN3AK20	chr5:57365101-57366420	MCF-7	breast:	n/a	n/a
12	POLR2A	chr5:57365282-57365333	MCF-7	breast:	n/a	n/a
13	GATA3	chr5:57365244-57366231	T-47D	breast:	n/a	chr5:57365565-57365572 chr5:57365563-57365572

No.	Distal block	Cell Line	Cell type
1	chr5:57363854..57365675-chr5:57374020..57376957,2	MCF-7	breast:
2	chr5:57364074..57376813-chr5:57753679..57758569,26	MCF-7	breast:
3	chr5:57362240..57365974-chr5:57753228..57757443,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238899	TF binding region
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10461644	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10461645	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10491418	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10491419	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1125324	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13152942	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13153091	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13155421	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159010	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13159117	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13160117	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13164786	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13168168	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13170721	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176924	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13177963	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13178678	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13179148	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13181962	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13185082	0.94[EUR][1000 genomes]
rs13185712	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13186152	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13186306	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13187466	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13190103	0.88[EUR][1000 genomes]
rs1549243	1.00[AFR][1000 genomes]
rs1549244	0.87[EUR][1000 genomes]
rs1565335	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16887923	1.00[AFR][1000 genomes]
rs17367557	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17367866	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17368537	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368635	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368691	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368889	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368931	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17368965	0.88[EUR][1000 genomes]
rs17369063	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17369443	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17369506	0.94[EUR][1000 genomes]
rs17369617	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17369645	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17370357	0.87[EUR][1000 genomes]
rs17433232	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433281	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433351	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433413	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433449	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433525	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17433602	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17433644	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17434105	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17434147	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17434756	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17434985	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17435116	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17750857	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750970	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17751024	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1862539	1.00[AFR][1000 genomes]
rs2130362	0.83[AMR][1000 genomes]
rs2409072	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2898084	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2910612	1.00[AFR][1000 genomes]
rs2962021	1.00[AFR][1000 genomes]
rs2964208	1.00[AFR][1000 genomes]
rs2964209	1.00[AFR][1000 genomes]
rs34028264	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34088369	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34140627	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34145550	0.88[EUR][1000 genomes]
rs34183980	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34283705	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34357926	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34362402	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34393614	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34469485	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34486088	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34540977	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34558865	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34561456	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34563650	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34668052	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34728348	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34739332	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34839607	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34900511	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34911212	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35020899	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35102344	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35288659	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35474010	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35480511	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35493107	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35559784	0.88[EUR][1000 genomes]
rs35585983	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35629187	1.00[AFR][1000 genomes]
rs35637947	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35699974	0.88[EUR][1000 genomes]
rs36003001	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36056213	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36108192	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36118761	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4328995	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4340877	1.00[AFR][1000 genomes]
rs58405952	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71624184	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71624185	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71624189	1.00[AFR][1000 genomes]
rs71624191	1.00[AFR][1000 genomes]
rs7734877	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7735526	0.88[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57357400-57368200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57360200-57368400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:57361400-57367600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:57363000-57368000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:57364400-57368000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:57365000-57365400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:57365000-57365400	Enhancers	Gastric	stomach
8	chr5:57365200-57365600	Enhancers	Esophagus	oesophagus
9	chr5:57365200-57365600	Enhancers	Pancreas	Pancrea
10	chr5:57365200-57366400	Enhancers	Stomach Mucosa	stomach

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