Variant report

Variant	rs17433602
Chromosome Location	chr5:57390618-57390619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57380277..57383256-chr5:57390263..57392079,2	MCF-7	breast:
2	chr5:57378894..57391869-chr5:57753957..57758751,18	MCF-7	breast:
3	chr5:57386521..57389081-chr5:57389684..57392524,3	MCF-7	breast:
4	chr5:57385340..57390728-chr5:57748892..57752531,5	MCF-7	breast:
5	chr5:57375652..57378198-chr5:57388610..57391514,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10461644	0.85[CEU][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10461645	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10491418	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10491419	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1125324	0.85[CEU][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13152942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13153091	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155421	0.88[EUR][1000 genomes]
rs13159010	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13159117	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13160117	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13164786	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13168168	0.88[EUR][1000 genomes]
rs13170721	0.88[EUR][1000 genomes]
rs13173426	1.00[AFR][1000 genomes]
rs13176924	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178678	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13179148	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13181962	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13185082	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13185712	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13186152	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13186306	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13187466	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13190103	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549244	0.85[CEU][hapmap];1.00[LWK][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1565335	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17367557	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367866	0.85[CEU][hapmap];0.82[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368537	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17368635	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17368691	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17368889	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17368931	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17368965	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17369063	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17369443	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17369506	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17369617	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17369645	0.85[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17370357	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17433232	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17433281	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17433351	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17433413	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17433449	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17433525	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17433644	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17434105	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17434147	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17434756	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17434985	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17435116	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17750857	0.88[EUR][1000 genomes]
rs17750946	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17750970	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17751024	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2130362	1.00[LWK][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2409072	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2898084	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34028264	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34088369	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34140627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34145550	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34183980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34283705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34357926	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34362402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34393614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34469485	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34486088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34540977	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34558865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34561456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34563650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34668052	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34728348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34739332	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34839607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34911212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35020899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35102344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35132533	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35288659	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35474010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35480511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35493107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35559784	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35585983	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35637947	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35699974	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36003001	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36056213	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36118761	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4328995	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58405952	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71624184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71624185	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7734877	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735526	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57389400-57390800	Enhancers	A549	lung
2	chr5:57389600-57391000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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