Variant report
| Variant | rs13173426 |
|---|---|
| Chromosome Location | chr5:57438508-57438509 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:57438189..57440013-chr5:57754337..57756980,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs13152942 | 1.00[AFR][1000 genomes] |
| rs13153091 | 1.00[AFR][1000 genomes] |
| rs13160117 | 1.00[AFR][1000 genomes] |
| rs13168414 | 0.82[EUR][1000 genomes] |
| rs13176924 | 1.00[AFR][1000 genomes] |
| rs13190103 | 0.83[AFR][1000 genomes] |
| rs1549244 | 1.00[AFR][1000 genomes] |
| rs17367557 | 1.00[AFR][1000 genomes] |
| rs17367866 | 1.00[AFR][1000 genomes] |
| rs17370357 | 1.00[AFR][1000 genomes] |
| rs17433232 | 1.00[AFR][1000 genomes] |
| rs17433281 | 1.00[AFR][1000 genomes] |
| rs17433351 | 1.00[AFR][1000 genomes] |
| rs17433449 | 1.00[AFR][1000 genomes] |
| rs17433602 | 1.00[AFR][1000 genomes] |
| rs17433644 | 1.00[AFR][1000 genomes] |
| rs2910573 | 0.80[EUR][1000 genomes] |
| rs34140627 | 1.00[AFR][1000 genomes] |
| rs34183980 | 1.00[AFR][1000 genomes] |
| rs34283705 | 1.00[AFR][1000 genomes] |
| rs34362402 | 1.00[AFR][1000 genomes] |
| rs34393614 | 1.00[AFR][1000 genomes] |
| rs34486088 | 1.00[AFR][1000 genomes] |
| rs34558865 | 1.00[AFR][1000 genomes] |
| rs34561456 | 1.00[AFR][1000 genomes] |
| rs34563650 | 1.00[AFR][1000 genomes] |
| rs34728348 | 1.00[AFR][1000 genomes] |
| rs34839607 | 1.00[AFR][1000 genomes] |
| rs34900511 | 1.00[AFR][1000 genomes] |
| rs34911212 | 1.00[AFR][1000 genomes] |
| rs34969852 | 0.83[EUR][1000 genomes] |
| rs35020899 | 1.00[AFR][1000 genomes] |
| rs35102344 | 1.00[AFR][1000 genomes] |
| rs35474010 | 1.00[AFR][1000 genomes] |
| rs35493107 | 1.00[AFR][1000 genomes] |
| rs7734877 | 1.00[AFR][1000 genomes] |
| rs989579 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033051 | chr5:57380218-57471801 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
