Variant report

Variant	rs2964173
Chromosome Location	chr5:57506770-57506771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1469090	0.82[ASN][1000 genomes]
rs1549243	0.89[EUR][1000 genomes]
rs1862539	1.00[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs2052547	0.82[ASN][1000 genomes]
rs2081087	0.91[ASN][1000 genomes]
rs2216683	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs245285	0.85[TSI][hapmap]
rs2910567	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs2910577	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2910592	0.89[JPT][hapmap]
rs2910612	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2962021	0.89[EUR][1000 genomes]
rs2964174	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2964200	0.82[ASN][1000 genomes]
rs2964208	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs2964209	1.00[EUR][1000 genomes]
rs37492	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57505400-57506800	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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