Variant report

Variant	rs245285
Chromosome Location	chr5:57633367-57633368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57632573..57635703-chr5:57754425..57757098,5	MCF-7	breast:
2	chr5:57631529..57633714-chr5:57748489..57751374,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs13159047	1.00[YRI][hapmap]
rs13168414	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs1469090	0.84[AFR][1000 genomes]
rs151868	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs152010	1.00[YRI][hapmap]
rs154670	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs154671	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs154673	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17709103	1.00[YRI][hapmap]
rs181745	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1981838	1.00[ASW][hapmap]
rs2052547	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2081087	0.84[AFR][1000 genomes]
rs2216679	1.00[YRI][hapmap]
rs2434584	0.84[AFR][1000 genomes]
rs245282	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs245287	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs245295	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs245296	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245493	1.00[YRI][hapmap]
rs246114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910573	1.00[YRI][hapmap]
rs2910577	0.84[AFR][1000 genomes]
rs2910592	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2910600	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs2910601	1.00[ASW][hapmap]
rs2910605	1.00[YRI][hapmap]
rs2964173	0.85[TSI][hapmap]
rs2964193	0.84[AFR][1000 genomes]
rs2964195	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2964200	0.84[AFR][1000 genomes]
rs37484	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs37485	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs37486	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs37488	0.84[AFR][1000 genomes]
rs37492	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs37516	0.84[AFR][1000 genomes]
rs37523	0.84[AFR][1000 genomes]
rs37526	0.84[AFR][1000 genomes]
rs37527	0.84[AFR][1000 genomes]
rs37528	0.84[AFR][1000 genomes]
rs37533	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs37536	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs40209	0.84[AFR][1000 genomes]
rs40210	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs41384	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs989579	1.00[ASW][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57627200-57634000	Weak transcription	Aorta	Aorta
2	chr5:57630400-57634600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links