Variant report

Variant	rs246114
Chromosome Location	chr5:57636252-57636253
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57635868..57638066-chr5:57754856..57757092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1469090	0.84[AFR][1000 genomes]
rs151868	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs154670	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs154671	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs154673	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs181745	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2052547	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2081087	0.84[AFR][1000 genomes]
rs2434584	0.84[AFR][1000 genomes]
rs245282	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs245285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245287	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs245295	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs245296	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910577	0.84[AFR][1000 genomes]
rs2910592	0.84[AFR][1000 genomes]
rs2964193	0.84[AFR][1000 genomes]
rs2964195	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2964200	0.84[AFR][1000 genomes]
rs37484	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs37485	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs37486	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs37488	0.84[AFR][1000 genomes]
rs37492	0.84[AFR][1000 genomes]
rs37516	0.84[AFR][1000 genomes]
rs37523	0.84[AFR][1000 genomes]
rs37526	0.84[AFR][1000 genomes]
rs37527	0.84[AFR][1000 genomes]
rs37528	0.84[AFR][1000 genomes]
rs37533	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs37536	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs40209	0.84[AFR][1000 genomes]
rs40210	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs41384	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57635600-57637400	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links