Variant report

Variant	rs2964193
Chromosome Location	chr5:57541919-57541920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57541847..57544684-chr5:57747160..57748861,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1035475	1.00[CEU][hapmap]
rs10472035	0.88[CEU][hapmap]
rs10472036	0.88[CEU][hapmap]
rs10513142	0.81[AFR][1000 genomes]
rs13159047	1.00[YRI][hapmap]
rs13168414	1.00[YRI][hapmap]
rs1469090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs151868	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs152010	1.00[YRI][hapmap]
rs154670	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs154671	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs154673	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17709103	1.00[YRI][hapmap]
rs181745	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1981838	0.88[CEU][hapmap]
rs2052547	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2081087	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2216678	0.84[AFR][1000 genomes]
rs2216679	0.88[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2434584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs245282	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs245285	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs245287	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs245295	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs245296	0.84[AFR][1000 genomes]
rs245493	1.00[YRI][hapmap]
rs246114	0.84[AFR][1000 genomes]
rs27210	0.81[AFR][1000 genomes]
rs27211	0.81[AFR][1000 genomes]
rs27840	0.81[AFR][1000 genomes]
rs2910569	0.88[CEU][hapmap]
rs2910573	1.00[YRI][hapmap]
rs2910577	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2910592	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2910594	0.88[CEU][hapmap]
rs2910600	0.88[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2910601	0.88[CEU][hapmap]
rs2910605	0.88[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2910611	0.88[CEU][hapmap]
rs2964173	1.00[JPT][hapmap]
rs2964184	0.88[CEU][hapmap]
rs2964195	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2964200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964205	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2964208	0.88[JPT][hapmap]
rs35263833	0.81[AFR][1000 genomes]
rs37484	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs37485	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs37486	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs37487	0.87[ASN][1000 genomes]
rs37488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs37492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs37516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs37523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs37526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs37527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs37528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs37533	0.88[AFR][1000 genomes]
rs37536	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs40209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs40210	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs41384	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs42963	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58174847	0.81[AFR][1000 genomes]
rs989579	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
2	chr5:57534800-57555200	Weak transcription	Left Ventricle	heart
3	chr5:57536200-57542200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:57536600-57544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:57536800-57542200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:57537400-57542200	Weak transcription	Osteobl	bone
7	chr5:57537600-57542200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:57537600-57542200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:57537600-57542200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:57537600-57542400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:57537600-57542400	Weak transcription	NHLF	lung
12	chr5:57537600-57542600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:57537800-57542200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:57537800-57542200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr5:57540400-57544200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:57540800-57542200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:57540800-57542800	Weak transcription	Psoas Muscle	Psoas
18	chr5:57540800-57542800	Enhancers	A549	lung
19	chr5:57540800-57543200	Enhancers	Hela-S3	cervix
20	chr5:57541000-57542000	Flanking Active TSS	HUVEC	blood vessel
21	chr5:57541200-57547000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:57541400-57542600	Enhancers	Spleen	Spleen
23	chr5:57541600-57542600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:57541600-57543200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:57541800-57542000	Weak transcription	Right Atrium	heart
26	chr5:57541800-57542200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr5:57541800-57542400	Enhancers	Adipose Nuclei	Adipose
28	chr5:57541800-57543000	Enhancers	NHDF-Ad	bronchial

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