Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1469090	0.84[ASN][1000 genomes]
rs154670	0.89[JPT][hapmap]
rs2052547	0.84[ASN][1000 genomes]
rs2434584	0.95[ASN][1000 genomes]
rs2910577	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2910592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2964173	0.89[JPT][hapmap]
rs2964193	0.87[ASN][1000 genomes]
rs2964195	0.87[ASN][1000 genomes]
rs2964200	0.84[ASN][1000 genomes]
rs2964205	0.95[ASN][1000 genomes]
rs37488	0.97[ASN][1000 genomes]
rs37492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs37516	0.97[ASN][1000 genomes]
rs37519	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs37521	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs37523	0.95[ASN][1000 genomes]
rs37524	0.85[AFR][1000 genomes]
rs37526	0.90[ASN][1000 genomes]
rs37527	0.95[ASN][1000 genomes]
rs37528	0.95[ASN][1000 genomes]
rs40209	0.95[ASN][1000 genomes]
rs41384	0.89[JPT][hapmap]
rs42963	0.95[ASN][1000 genomes]
rs43217	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57590800-57597800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57591400-57596400	Weak transcription	Primary monocytes fromperipheralblood	blood

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