Variant report

Variant	rs2964184
Chromosome Location	chr5:57478116-57478117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
2	chr5:57476351..57480907-chr5:57753998..57756749,5	MCF-7	breast:
3	chr5:57391599..57394381-chr5:57475722..57478619,2	MCF-7	breast:
4	chr5:57182312..57184044-chr5:57477826..57480131,3	MCF-7	breast:
5	chr5:57475683..57478861-chr5:57750004..57752974,3	MCF-7	breast:
6	chr5:57477268..57479454-chr5:57480690..57483855,3	MCF-7	breast:
7	chr5:57477916..57481431-chr5:57481890..57485680,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1035475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13168414	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs13187650	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473200	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549243	1.00[ASN][1000 genomes]
rs1862539	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1981838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981839	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081087	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2194195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216678	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216683	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2216685	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409013	0.81[EUR][1000 genomes]
rs2860439	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910567	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2910569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910571	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910573	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2910577	0.80[EUR][1000 genomes]
rs2910592	0.88[CEU][hapmap]
rs2910593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910612	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2961999	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962021	1.00[ASN][1000 genomes]
rs2962024	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2964200	0.80[EUR][1000 genomes]
rs34969852	0.87[ASN][1000 genomes]
rs37492	0.88[CEU][hapmap]
rs988697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989579	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57479200	Enhancers	Stomach Mucosa	stomach
2	chr5:57477200-57480000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:57477200-57486000	Enhancers	HSMM	muscle
4	chr5:57477400-57478600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:57477400-57479000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:57477400-57479200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:57477400-57479200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:57477400-57479400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:57477400-57479400	Enhancers	HUVEC	blood vessel
10	chr5:57477400-57483600	Enhancers	Hela-S3	cervix
11	chr5:57477600-57478200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:57477600-57478200	Weak transcription	Gastric	stomach
13	chr5:57477600-57478200	Flanking Active TSS	A549	lung
14	chr5:57477600-57478800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:57477600-57479200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:57477600-57479400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:57477600-57480400	Enhancers	HSMMtube	muscle
18	chr5:57477600-57483600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr5:57477800-57478200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:57477800-57478200	Weak transcription	Ovary	ovary
21	chr5:57477800-57478600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:57477800-57478600	Enhancers	Fetal Lung	lung
23	chr5:57477800-57478800	Enhancers	Brain Hippocampus Middle	brain
24	chr5:57477800-57478800	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr5:57478000-57478400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr5:57478000-57478800	Enhancers	Brain Angular Gyrus	brain
27	chr5:57478000-57479000	Enhancers	Fetal Kidney	kidney
28	chr5:57478000-57483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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