Variant report

Variant	rs1473200
Chromosome Location	chr5:57498443-57498444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57485569..57487719-chr5:57497536..57499208,2	MCF-7	breast:
2	chr5:57434758..57437062-chr5:57498020..57500509,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1035475	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472035	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472036	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13168414	0.87[ASN][1000 genomes]
rs13187650	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1549243	1.00[ASN][1000 genomes]
rs1862539	1.00[ASN][1000 genomes]
rs1981838	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981839	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081087	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2194195	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216678	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216679	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216683	1.00[ASN][1000 genomes]
rs2216685	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409013	0.80[EUR][1000 genomes]
rs2860439	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910569	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910571	0.91[ASN][1000 genomes]
rs2910573	0.90[ASN][1000 genomes]
rs2910593	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910594	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910600	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910601	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910605	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910611	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910612	0.94[ASN][1000 genomes]
rs2961999	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962021	1.00[ASN][1000 genomes]
rs2962024	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2964184	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34969852	0.87[ASN][1000 genomes]
rs988697	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989579	0.87[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57495400-57500600	Weak transcription	Aorta	Aorta
2	chr5:57497600-57498600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:57498000-57498600	Enhancers	Esophagus	oesophagus
4	chr5:57498000-57498600	Enhancers	Hela-S3	cervix
5	chr5:57498400-57505400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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