Variant report

Variant	rs2910605
Chromosome Location	chr5:57477603-57477604
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
2	chr5:57476351..57480907-chr5:57753998..57756749,5	MCF-7	breast:
3	chr5:57391599..57394381-chr5:57475722..57478619,2	MCF-7	breast:
4	chr5:57475683..57478861-chr5:57750004..57752974,3	MCF-7	breast:
5	chr5:57477268..57479454-chr5:57480690..57483855,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1035475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13168414	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13187650	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469090	0.84[AFR][1000 genomes]
rs1473200	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151868	0.84[AFR][1000 genomes]
rs152010	1.00[YRI][hapmap]
rs154670	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs154671	0.84[AFR][1000 genomes]
rs154673	0.84[AFR][1000 genomes]
rs1549243	1.00[ASN][1000 genomes]
rs181745	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1862539	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1981838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981839	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081087	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2194195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216678	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2216683	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2216685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409013	0.81[EUR][1000 genomes]
rs2434584	0.84[AFR][1000 genomes]
rs245282	0.84[AFR][1000 genomes]
rs245285	1.00[YRI][hapmap]
rs245287	0.84[AFR][1000 genomes]
rs245295	0.84[AFR][1000 genomes]
rs245493	1.00[YRI][hapmap]
rs2860439	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910567	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2910569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910571	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910573	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2910577	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2910592	0.88[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2910593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910612	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2961999	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2962021	1.00[ASN][1000 genomes]
rs2962024	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2964184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964193	0.84[AFR][1000 genomes]
rs2964200	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34969852	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs37484	0.84[AFR][1000 genomes]
rs37485	0.84[AFR][1000 genomes]
rs37486	0.84[AFR][1000 genomes]
rs37488	0.84[AFR][1000 genomes]
rs37492	0.88[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs37516	0.84[AFR][1000 genomes]
rs37523	0.84[AFR][1000 genomes]
rs37526	0.84[AFR][1000 genomes]
rs37527	0.84[AFR][1000 genomes]
rs37528	0.84[AFR][1000 genomes]
rs37536	0.84[AFR][1000 genomes]
rs40209	0.84[AFR][1000 genomes]
rs40210	0.84[AFR][1000 genomes]
rs41384	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs988697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989579	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57478000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:57477200-57479200	Enhancers	Stomach Mucosa	stomach
3	chr5:57477200-57480000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:57477200-57486000	Enhancers	HSMM	muscle
5	chr5:57477400-57477800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:57477400-57477800	Enhancers	Ovary	ovary
7	chr5:57477400-57478600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:57477400-57479000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:57477400-57479200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:57477400-57479200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:57477400-57479400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:57477400-57479400	Enhancers	HUVEC	blood vessel
13	chr5:57477400-57483600	Enhancers	Hela-S3	cervix
14	chr5:57477600-57478200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:57477600-57478200	Weak transcription	Gastric	stomach
16	chr5:57477600-57478200	Flanking Active TSS	A549	lung
17	chr5:57477600-57478800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:57477600-57479200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:57477600-57479400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr5:57477600-57480400	Enhancers	HSMMtube	muscle
21	chr5:57477600-57483600	Enhancers	Muscle Satellite Cultured Cells	--

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