Variant report

Variant	rs245493
Chromosome Location	chr5:57635488-57635489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13159047	1.00[YRI][hapmap]
rs13168414	1.00[YRI][hapmap]
rs152010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154670	1.00[YRI][hapmap]
rs17709103	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs181745	0.81[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs2216679	1.00[YRI][hapmap]
rs245285	1.00[YRI][hapmap]
rs2910573	1.00[YRI][hapmap]
rs2910592	1.00[YRI][hapmap]
rs2910600	0.81[LWK][hapmap];1.00[YRI][hapmap]
rs2910605	1.00[YRI][hapmap]
rs37492	1.00[YRI][hapmap]
rs375523	0.86[MEX][hapmap]
rs41384	0.81[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs989579	0.81[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57634200-57635600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57634600-57635600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:57634600-57635800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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