Variant report

Variant	rs4110696
Chromosome Location	chr9:95579816-95579817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10124671	0.85[EUR][1000 genomes]
rs1040978	0.85[EUR][1000 genomes]
rs10739931	0.85[EUR][1000 genomes]
rs10739935	0.81[EUR][1000 genomes]
rs10761174	0.84[EUR][1000 genomes]
rs10821019	0.85[AFR][1000 genomes]
rs13301210	0.85[EUR][1000 genomes]
rs2057457	0.82[EUR][1000 genomes]
rs4465027	0.83[EUR][1000 genomes]
rs6479432	0.84[EUR][1000 genomes]
rs6479433	0.84[EUR][1000 genomes]
rs7860417	0.83[EUR][1000 genomes]
rs965654	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv972420	chr9:95566045-95588965	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95572600-95583000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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