Variant report

Variant	rs4465027
Chromosome Location	chr9:95623917-95623918
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95622406..95624700-chr9:95624887..95627823,2	MCF-7	breast:
2	chr9:95619636..95621333-chr9:95622156..95624775,2	K562	blood:
3	chr9:95616147..95619128-chr9:95623269..95625845,3	MCF-7	breast:
4	chr9:95622113..95625066-chr9:95625770..95628383,4	K562	blood:

Variant related genes	Relation type
ENSG00000127081	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10124671	0.92[CHB][hapmap];0.85[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1040978	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10733745	0.90[EUR][1000 genomes]
rs10739930	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10739931	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739935	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10761174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821019	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13301210	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2057457	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4110696	0.83[EUR][1000 genomes]
rs4744153	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs6479432	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479433	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038387	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7040331	0.85[EUR][1000 genomes]
rs7860417	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7868874	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7875611	0.81[EUR][1000 genomes]
rs965654	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95605000-95624200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:95609000-95639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:95611200-95632800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:95612400-95624200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:95614000-95624200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr9:95616200-95639800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:95616400-95632800	Weak transcription	Gastric	stomach
8	chr9:95616400-95639800	Weak transcription	Small Intestine	intestine
9	chr9:95616600-95639600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:95618200-95630200	Weak transcription	Right Ventricle	heart
11	chr9:95618200-95639800	Weak transcription	Colonic Mucosa	Colon
12	chr9:95618400-95624600	Weak transcription	Fetal Heart	heart
13	chr9:95618400-95637600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:95618400-95638600	Weak transcription	K562	blood
15	chr9:95618600-95630400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:95618600-95630800	Weak transcription	Psoas Muscle	Psoas
17	chr9:95618600-95638000	Weak transcription	Brain Anterior Caudate	brain
18	chr9:95619600-95638600	Weak transcription	Brain Angular Gyrus	brain
19	chr9:95619800-95630200	Weak transcription	HepG2	liver
20	chr9:95620000-95627000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr9:95620000-95630000	Weak transcription	HUVEC	blood vessel
22	chr9:95621200-95624400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr9:95621400-95625200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr9:95621600-95624200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr9:95621600-95624600	Strong transcription	HSMM	muscle
26	chr9:95621600-95626800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:95621800-95625000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr9:95622400-95624000	Strong transcription	Dnd41	blood
29	chr9:95622400-95624400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:95622400-95626600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:95622400-95629800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr9:95622400-95630000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:95622400-95630000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr9:95622400-95630200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr9:95622400-95630800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:95622400-95631600	Weak transcription	Osteobl	bone
37	chr9:95622400-95632800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:95622400-95632800	Weak transcription	Thymus	Thymus
39	chr9:95622400-95635200	Weak transcription	Colon Smooth Muscle	Colon
40	chr9:95622400-95637600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr9:95622400-95637800	Weak transcription	Hela-S3	cervix
42	chr9:95622400-95638000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:95622400-95638000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr9:95622400-95638600	Weak transcription	HMEC	breast
45	chr9:95622400-95638600	Weak transcription	NHDF-Ad	bronchial
46	chr9:95622400-95638800	Weak transcription	NHLF	lung
47	chr9:95622600-95624000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr9:95622600-95624800	Strong transcription	Liver	Liver
49	chr9:95622600-95627200	Weak transcription	Fetal Intestine Large	intestine
50	chr9:95622600-95627400	Weak transcription	Fetal Intestine Small	intestine

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