Variant report

Variant	rs10739935
Chromosome Location	chr9:95643629-95643630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95632175..95634114-chr9:95643076..95644693,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10124671	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1040978	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10733745	0.87[EUR][1000 genomes]
rs10739930	0.81[EUR][1000 genomes]
rs10739931	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10761174	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821019	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13301210	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2057457	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4110696	0.81[EUR][1000 genomes]
rs4465027	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744153	0.85[EUR][1000 genomes]
rs6479432	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6479433	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7038387	0.88[ASN][1000 genomes]
rs7040331	0.83[EUR][1000 genomes]
rs7860417	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7868874	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs965654	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv972781	chr9:95639258-95671744	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95640400-95644600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:95640400-95644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:95640600-95645000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:95640600-95645800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr9:95640600-95648800	Weak transcription	Thymus	Thymus
6	chr9:95640800-95644000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:95640800-95644400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:95640800-95644600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:95640800-95644600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:95640800-95644800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:95640800-95645200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:95640800-95646000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:95640800-95646400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:95640800-95647800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:95640800-95648600	Weak transcription	Primary T cells from cord blood	blood
16	chr9:95640800-95648600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:95641000-95644400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr9:95641000-95646000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr9:95641000-95646600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:95641000-95648400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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