Variant report

Variant	rs7040331
Chromosome Location	chr9:95595797-95595798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10124671	0.86[EUR][1000 genomes]
rs1040978	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10739930	0.82[EUR][1000 genomes]
rs10739931	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10739935	0.83[EUR][1000 genomes]
rs10761174	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13301210	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2057457	0.84[EUR][1000 genomes]
rs4465027	0.85[EUR][1000 genomes]
rs6479432	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6479433	0.85[EUR][1000 genomes]
rs7860417	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs965654	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95583600-95596600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links