Variant report

Variant	rs41277390
Chromosome Location	chr10:22022650-22022651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22016488..22019556-chr10:22021211..22023885,3	MCF-7	breast:
2	chr10:22013479..22016452-chr10:22019957..22022954,2	MCF-7	breast:
3	chr10:22021257..22022866-chr10:22032491..22034519,2	MCF-7	breast:
4	chr10:22022540..22025480-chr10:22028506..22030134,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs41304605	0.83[ASN][1000 genomes]
rs56328322	0.83[ASN][1000 genomes]
rs66572733	0.84[ASN][1000 genomes]
rs67009934	0.83[ASN][1000 genomes]
rs67160003	0.83[ASN][1000 genomes]
rs72802956	0.83[ASN][1000 genomes]
rs72802964	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
6	esv3374002	chr10:22005580-22026097	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22000800-22022800	Weak transcription	Aorta	Aorta
2	chr10:22002400-22027600	Weak transcription	Psoas Muscle	Psoas
3	chr10:22003000-22027400	Weak transcription	Colonic Mucosa	Colon
4	chr10:22004200-22022800	Weak transcription	Esophagus	oesophagus
5	chr10:22004200-22022800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:22005000-22024200	Weak transcription	Right Ventricle	heart
7	chr10:22014000-22025000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:22014200-22022800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:22014200-22025400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr10:22014400-22022800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:22014400-22024200	Weak transcription	Brain Angular Gyrus	brain
12	chr10:22014400-22024200	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:22014400-22025600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:22014400-22027400	Weak transcription	Hela-S3	cervix
15	chr10:22014400-22029600	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:22014600-22024400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:22014600-22027600	Weak transcription	Ovary	ovary
18	chr10:22014600-22032400	Weak transcription	Small Intestine	intestine
19	chr10:22014600-22033200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:22015000-22025600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:22015000-22034200	Strong transcription	Dnd41	blood
22	chr10:22015200-22024800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:22015200-22034200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr10:22015200-22034400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr10:22015400-22029600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:22015800-22025600	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:22016800-22022800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:22016800-22024200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:22016800-22024800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr10:22016800-22038800	Weak transcription	Stomach Mucosa	stomach
31	chr10:22017000-22024000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:22017000-22024200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:22017000-22024600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:22017000-22025400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr10:22017000-22025400	Weak transcription	Fetal Brain Female	brain
36	chr10:22017000-22027600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr10:22017600-22023600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:22018000-22025800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:22018200-22034400	Strong transcription	Fetal Intestine Large	intestine
40	chr10:22019200-22027800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:22019600-22023200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:22019800-22023200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:22019800-22026400	Strong transcription	HMEC	breast
44	chr10:22019800-22026600	Strong transcription	K562	blood
45	chr10:22019800-22034400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:22020000-22023000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:22020200-22023200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:22020600-22023200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
49	chr10:22020600-22025600	Strong transcription	Fetal Thymus	thymus
50	chr10:22020800-22022800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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