Variant report

Variant	rs67160003
Chromosome Location	chr10:21988356-21988357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16921919	0.91[ASN][1000 genomes]
rs41277390	0.83[ASN][1000 genomes]
rs41304605	1.00[ASN][1000 genomes]
rs56328322	1.00[ASN][1000 genomes]
rs66572733	0.83[ASN][1000 genomes]
rs67009934	1.00[ASN][1000 genomes]
rs67626393	0.91[ASN][1000 genomes]
rs72802956	1.00[ASN][1000 genomes]
rs72802964	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv1792771	chr10:21874152-22013644	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv1803077	chr10:21878144-22013644	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21938600-21993800	Weak transcription	Lung	lung
2	chr10:21942600-22004000	Weak transcription	NH-A	brain
3	chr10:21942800-21988400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:21943800-22002000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:21951200-21989000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:21951800-21989200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:21961400-21993800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:21963000-21993600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:21970400-21988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:21970400-21988600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:21976800-21988400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:21976800-21988400	Weak transcription	A549	lung
13	chr10:21976800-21989200	Weak transcription	NHDF-Ad	bronchial
14	chr10:21976800-22013000	Weak transcription	HSMMtube	muscle
15	chr10:21977000-22002200	Weak transcription	Osteobl	bone
16	chr10:21977600-21989400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:21977800-21988400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr10:21977800-21988600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:21977800-21992400	Weak transcription	Fetal Thymus	thymus
20	chr10:21981400-21994200	Weak transcription	Esophagus	oesophagus
21	chr10:21981800-21993800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:21982200-22001600	Weak transcription	Placenta	Placenta
23	chr10:21983800-22002000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:21984000-21992400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:21984000-22012400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:21984200-21989200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:21984200-21993800	Weak transcription	Pancreas	Pancrea
28	chr10:21984200-21994400	Weak transcription	Ovary	ovary
29	chr10:21984400-21988600	Weak transcription	Liver	Liver
30	chr10:21984400-21993000	Weak transcription	Left Ventricle	heart
31	chr10:21984400-22002800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr10:21984800-21990400	Weak transcription	Fetal Stomach	stomach
33	chr10:21984800-22022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:21985400-21988400	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:21985600-21989600	Weak transcription	Primary T cells from cord blood	blood
36	chr10:21986000-21988600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:21986200-21988400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:21986400-21989600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:21986400-21991000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:21986600-21988400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:21986600-21990000	ZNF genes & repeats	Dnd41	blood
42	chr10:21986600-21990400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:21986800-21989000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr10:21987000-21988600	Strong transcription	Primary B cells from cord blood	blood
45	chr10:21987000-21990200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:21987200-21993800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:21987400-21988400	Weak transcription	Fetal Lung	lung
48	chr10:21987400-21990200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:21987400-21990600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:21987400-21990600	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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