Variant report

Variant	rs67626393
Chromosome Location	chr10:22046544-22046545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22042822..22044423-chr10:22044598..22047460,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16921919	0.82[ASN][1000 genomes]
rs16921947	0.89[EUR][1000 genomes]
rs41304605	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55702118	1.00[EUR][1000 genomes]
rs55742770	0.89[EUR][1000 genomes]
rs55789720	1.00[EUR][1000 genomes]
rs55880968	0.89[EUR][1000 genomes]
rs56328322	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61454417	0.89[EUR][1000 genomes]
rs66572733	0.92[ASN][1000 genomes]
rs66867344	0.89[EUR][1000 genomes]
rs66954116	1.00[EUR][1000 genomes]
rs67009934	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67106981	1.00[EUR][1000 genomes]
rs67160003	0.91[ASN][1000 genomes]
rs72797462	0.89[EUR][1000 genomes]
rs72797470	0.89[EUR][1000 genomes]
rs72797476	0.89[EUR][1000 genomes]
rs72797490	1.00[EUR][1000 genomes]
rs72802931	0.89[EUR][1000 genomes]
rs72802956	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72802957	1.00[EUR][1000 genomes]
rs72802961	1.00[EUR][1000 genomes]
rs72802964	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72804392	0.87[EUR][1000 genomes]
rs72806318	0.87[EUR][1000 genomes]
rs72806334	0.89[EUR][1000 genomes]
rs72806949	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv540513	chr10:22031022-22065456	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22028200-22056600	Weak transcription	Hela-S3	cervix
2	chr10:22029400-22053000	Weak transcription	Colonic Mucosa	Colon
3	chr10:22033800-22046600	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:22033800-22047400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:22033800-22047400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:22033800-22047600	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:22034000-22046800	Weak transcription	Brain Substantia Nigra	brain
8	chr10:22034000-22046800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:22034000-22047600	Weak transcription	Small Intestine	intestine
10	chr10:22034000-22047800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:22034000-22049800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:22034000-22052600	Weak transcription	Primary B cells from cord blood	blood
13	chr10:22034200-22047400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:22034400-22047200	Weak transcription	Aorta	Aorta
15	chr10:22034400-22047600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:22034400-22047600	Weak transcription	Brain Angular Gyrus	brain
17	chr10:22034400-22047600	Weak transcription	Left Ventricle	heart
18	chr10:22034400-22049200	Weak transcription	Brain Germinal Matrix	brain
19	chr10:22034400-22049200	Weak transcription	A549	lung
20	chr10:22034400-22049800	Weak transcription	Brain Anterior Caudate	brain
21	chr10:22034400-22051000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr10:22034400-22054200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:22034400-22057600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:22034400-22074000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:22034800-22047000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr10:22035400-22047000	Weak transcription	GM12878-XiMat	blood
27	chr10:22035800-22050000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:22036000-22053000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:22036000-22053200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:22036200-22049600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:22036200-22050200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:22036200-22052600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr10:22036200-22052800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:22036200-22066600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:22036600-22052800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:22039800-22049800	Weak transcription	Esophagus	oesophagus
37	chr10:22041200-22046600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:22041200-22049400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr10:22041200-22055400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:22041400-22047400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:22041800-22047400	Weak transcription	Fetal Intestine Large	intestine
42	chr10:22041800-22049000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:22042000-22046800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:22042200-22048800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:22042800-22049600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:22043600-22049000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:22043600-22049000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:22043600-22049400	Strong transcription	Liver	Liver
49	chr10:22043600-22049800	Strong transcription	Fetal Intestine Small	intestine
50	chr10:22043800-22046800	Weak transcription	Right Ventricle	heart

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