Variant report

Variant	rs72797476
Chromosome Location	chr10:22220496-22220497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11814448	0.82[EUR][1000 genomes]
rs11818726	0.90[EUR][1000 genomes]
rs12248406	0.82[EUR][1000 genomes]
rs16921919	0.82[EUR][1000 genomes]
rs41304605	1.00[EUR][1000 genomes]
rs55702118	0.89[EUR][1000 genomes]
rs55742770	1.00[EUR][1000 genomes]
rs55789720	0.89[EUR][1000 genomes]
rs55880968	1.00[EUR][1000 genomes]
rs55990219	0.90[EUR][1000 genomes]
rs56024469	0.89[EUR][1000 genomes]
rs56121502	0.89[EUR][1000 genomes]
rs56328322	0.89[EUR][1000 genomes]
rs66954116	0.89[EUR][1000 genomes]
rs67009934	1.00[EUR][1000 genomes]
rs67106981	0.89[EUR][1000 genomes]
rs67626393	0.89[EUR][1000 genomes]
rs7078177	0.82[EUR][1000 genomes]
rs72797462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72797470	1.00[EUR][1000 genomes]
rs72797490	0.89[EUR][1000 genomes]
rs72802931	1.00[EUR][1000 genomes]
rs72802957	0.89[EUR][1000 genomes]
rs72802961	0.89[EUR][1000 genomes]
rs72802964	0.89[EUR][1000 genomes]
rs72804398	0.90[EUR][1000 genomes]
rs72806334	1.00[EUR][1000 genomes]
rs72806949	1.00[EUR][1000 genomes]
rs72806951	0.82[EUR][1000 genomes]
rs72806995	1.00[EUR][1000 genomes]
rs72806996	1.00[EUR][1000 genomes]
rs72807000	1.00[EUR][1000 genomes]
rs72807001	1.00[EUR][1000 genomes]
rs72810732	0.89[EUR][1000 genomes]
rs72810741	0.89[EUR][1000 genomes]
rs72810756	0.89[EUR][1000 genomes]
rs72810759	0.89[EUR][1000 genomes]
rs72810761	0.89[EUR][1000 genomes]
rs72810769	0.89[EUR][1000 genomes]
rs7912711	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1048924	chr10:22177164-22296409	Enhancers Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv894948	chr10:22203392-22255097	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv947596	chr10:22219973-22227016	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22179000-22224000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr10:22183400-22221000	Weak transcription	Left Ventricle	heart
3	chr10:22185000-22222000	Weak transcription	Right Ventricle	heart
4	chr10:22188800-22229200	Weak transcription	Aorta	Aorta
5	chr10:22193000-22224200	Weak transcription	Primary B cells from cord blood	blood
6	chr10:22196200-22223400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:22199600-22250800	Weak transcription	Pancreas	Pancrea
8	chr10:22203000-22221200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:22215200-22221000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:22215600-22228600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:22216800-22221200	Weak transcription	Hela-S3	cervix
12	chr10:22217000-22221800	Weak transcription	NHLF	lung
13	chr10:22217200-22222200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:22217200-22224800	Weak transcription	Placenta	Placenta
15	chr10:22217600-22221000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:22218000-22222400	Enhancers	K562	blood
17	chr10:22218200-22222600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:22218400-22222200	Weak transcription	Stomach Mucosa	stomach
19	chr10:22218400-22223400	Weak transcription	HMEC	breast
20	chr10:22218600-22223400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:22219000-22221600	Enhancers	Fetal Heart	heart
22	chr10:22219200-22222600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:22219200-22223400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:22219200-22225000	Weak transcription	Gastric	stomach

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