Variant report

Variant	rs72806996
Chromosome Location	chr10:22313470-22313471
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11814448	0.82[EUR][1000 genomes]
rs11818726	0.90[EUR][1000 genomes]
rs12248406	0.82[EUR][1000 genomes]
rs16921919	0.82[EUR][1000 genomes]
rs55702118	0.89[EUR][1000 genomes]
rs55789720	0.89[EUR][1000 genomes]
rs55880968	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56024469	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56027722	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56121502	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56162327	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56323200	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56328322	0.89[EUR][1000 genomes]
rs66954116	0.89[EUR][1000 genomes]
rs67106981	0.89[EUR][1000 genomes]
rs7078177	0.82[EUR][1000 genomes]
rs72797462	1.00[EUR][1000 genomes]
rs72797470	1.00[EUR][1000 genomes]
rs72797476	1.00[EUR][1000 genomes]
rs72797490	0.89[EUR][1000 genomes]
rs72802957	0.89[EUR][1000 genomes]
rs72802961	0.89[EUR][1000 genomes]
rs72802964	0.89[EUR][1000 genomes]
rs72804398	0.90[EUR][1000 genomes]
rs72806334	1.00[EUR][1000 genomes]
rs72806949	1.00[EUR][1000 genomes]
rs72806951	0.82[EUR][1000 genomes]
rs72806995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72807000	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72807001	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810732	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72810741	0.89[EUR][1000 genomes]
rs72810756	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72810759	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72810761	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72810769	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72810772	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72810773	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72812739	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72812756	0.89[AFR][1000 genomes]
rs7912711	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22311400-22316200	Weak transcription	Stomach Mucosa	stomach
2	chr10:22311800-22316400	Weak transcription	Placenta	Placenta
3	chr10:22312600-22317800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr10:22312600-22317800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:22312600-22318000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:22312800-22317600	Weak transcription	Primary T cells from cord blood	blood
7	chr10:22313000-22318000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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