Variant report
| Variant | rs12248406 |
|---|---|
| Chromosome Location | chr10:22319508-22319509 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10466081 | 1.00[CHB][hapmap] |
| rs10508640 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs10508642 | 1.00[CHB][hapmap] |
| rs11012890 | 1.00[CHB][hapmap] |
| rs11012892 | 1.00[CHB][hapmap] |
| rs11012894 | 1.00[CHB][hapmap] |
| rs11814448 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11818726 | 0.91[EUR][1000 genomes] |
| rs12262626 | 1.00[ASN][1000 genomes] |
| rs12263070 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs16921947 | 0.87[GIH][hapmap];0.82[EUR][1000 genomes] |
| rs16921976 | 1.00[CEU][hapmap];0.87[GIH][hapmap] |
| rs16922008 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs16922014 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs16922097 | 0.87[GIH][hapmap] |
| rs16922112 | 1.00[CHB][hapmap] |
| rs55880968 | 0.82[EUR][1000 genomes] |
| rs61454417 | 0.82[EUR][1000 genomes] |
| rs66867344 | 0.82[EUR][1000 genomes] |
| rs7078177 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7090197 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs7095916 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs72797462 | 0.82[EUR][1000 genomes] |
| rs72797470 | 0.82[EUR][1000 genomes] |
| rs72797476 | 0.82[EUR][1000 genomes] |
| rs72806334 | 0.82[EUR][1000 genomes] |
| rs72806949 | 0.82[EUR][1000 genomes] |
| rs72806995 | 0.82[EUR][1000 genomes] |
| rs72806996 | 0.82[EUR][1000 genomes] |
| rs72807000 | 0.82[EUR][1000 genomes] |
| rs72807001 | 0.82[EUR][1000 genomes] |
| rs74122772 | 1.00[ASN][1000 genomes] |
| rs7912711 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831808 | chr10:22187850-22357814 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:22319400-22319800 | Enhancers | Duodenum Mucosa | Duodenum |
