Variant report
| Variant | rs12263070 |
|---|---|
| Chromosome Location | chr10:22392364-22392365 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22392202..22394692-chr10:22609126..22611817,2 | MCF-7 | breast: | |
| 2 | chr10:22290858..22292546-chr10:22390293..22393012,2 | MCF-7 | breast: | |
| 3 | chr10:22390658..22392555-chr10:22540780..22543076,2 | MCF-7 | breast: | |
| 4 | chr10:22291123..22293535-chr10:22390579..22394203,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168283 | Chromatin interaction |
| ENSG00000136770 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10466081 | 1.00[CHB][hapmap] |
| rs10508640 | 1.00[CHB][hapmap] |
| rs10508641 | 1.00[CEU][hapmap] |
| rs10508642 | 1.00[CHB][hapmap] |
| rs11012890 | 1.00[CHB][hapmap] |
| rs11012892 | 1.00[CHB][hapmap] |
| rs11012894 | 1.00[CHB][hapmap] |
| rs12248406 | 1.00[ASN][1000 genomes] |
| rs12262626 | 1.00[ASN][1000 genomes] |
| rs16921947 | 0.89[EUR][1000 genomes] |
| rs16922008 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16922014 | 0.94[ASW][hapmap];1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16922097 | 1.00[CEU][hapmap] |
| rs16922112 | 1.00[CHB][hapmap] |
| rs56027722 | 0.87[EUR][1000 genomes] |
| rs56162327 | 0.87[EUR][1000 genomes] |
| rs56323200 | 0.87[EUR][1000 genomes] |
| rs61454417 | 0.89[EUR][1000 genomes] |
| rs66867344 | 0.89[EUR][1000 genomes] |
| rs7069565 | 0.89[EUR][1000 genomes] |
| rs7090197 | 1.00[CHB][hapmap] |
| rs7095916 | 1.00[CHB][hapmap] |
| rs72810771 | 0.87[EUR][1000 genomes] |
| rs72810772 | 0.87[EUR][1000 genomes] |
| rs72810773 | 0.87[EUR][1000 genomes] |
| rs72812739 | 0.87[EUR][1000 genomes] |
| rs74122772 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv971872 | chr10:22386395-22398112 | Weak transcription Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:22392000-22392400 | Enhancers | Primary monocytes fromperipheralblood | blood |
