Variant report

Variant	rs56323200
Chromosome Location	chr10:22394305-22394306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22392202..22394692-chr10:22609126..22611817,2	MCF-7	breast:
2	chr10:22393820..22395518-chr10:22421627..22424480,2	K562	blood:
3	chr10:22393772..22396494-chr10:22400221..22401954,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168283	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11815737	0.87[EUR][1000 genomes]
rs12263070	0.87[EUR][1000 genomes]
rs16922008	0.87[EUR][1000 genomes]
rs16922014	0.87[EUR][1000 genomes]
rs55702118	0.87[EUR][1000 genomes]
rs55789720	0.87[EUR][1000 genomes]
rs56024469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56027722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56121502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56162327	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66954116	0.87[EUR][1000 genomes]
rs67106981	0.87[EUR][1000 genomes]
rs72797490	0.87[EUR][1000 genomes]
rs72806995	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72806996	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72810732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810741	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810756	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810761	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810769	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810771	1.00[EUR][1000 genomes]
rs72810772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72812739	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72812745	0.87[EUR][1000 genomes]
rs72812756	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv971872	chr10:22386395-22398112	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22393800-22398600	Weak transcription	Fetal Stomach	stomach

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