Variant report

Variant	rs72812739
Chromosome Location	chr10:22420962-22420963
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22420199..22422040-chr10:22422230..22425211,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11815737	0.87[EUR][1000 genomes]
rs12263070	0.87[EUR][1000 genomes]
rs16922008	0.87[EUR][1000 genomes]
rs16922014	0.87[EUR][1000 genomes]
rs55702118	0.87[EUR][1000 genomes]
rs55789720	0.87[EUR][1000 genomes]
rs56024469	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56027722	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56121502	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56162327	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56323200	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66954116	0.87[EUR][1000 genomes]
rs67106981	0.87[EUR][1000 genomes]
rs72797490	0.87[EUR][1000 genomes]
rs72806995	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72806996	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72810732	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810741	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810756	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810759	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810761	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810769	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810771	1.00[EUR][1000 genomes]
rs72810772	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810773	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72812745	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72812756	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22417200-22422600	Weak transcription	Right Atrium	heart
2	chr10:22418800-22421800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:22418800-22421800	Weak transcription	Placenta	Placenta
4	chr10:22420200-22421600	Weak transcription	K562	blood
5	chr10:22420200-22423000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:22420200-22423200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:22420400-22423000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:22420600-22421800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:22420800-22422000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links