Variant report

Variant	rs56024469
Chromosome Location	chr10:22376200-22376201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22291844..22293403-chr10:22373524..22376367,2	K562	blood:
2	chr10:22375898..22377532-chr10:22500069..22502675,2	MCF-7	breast:
3	chr10:22374255..22376560-chr10:22387023..22389158,2	K562	blood:
4	chr10:22354546..22356477-chr10:22374979..22377005,2	MCF-7	breast:
5	chr10:22340845..22341652-chr10:22375581..22376424,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136770	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16921947	0.89[EUR][1000 genomes]
rs55702118	1.00[EUR][1000 genomes]
rs55789720	1.00[EUR][1000 genomes]
rs55880968	0.89[EUR][1000 genomes]
rs56027722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56121502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56162327	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56323200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61454417	0.89[EUR][1000 genomes]
rs66867344	0.89[EUR][1000 genomes]
rs66954116	1.00[EUR][1000 genomes]
rs67106981	1.00[EUR][1000 genomes]
rs72797462	0.89[EUR][1000 genomes]
rs72797470	0.89[EUR][1000 genomes]
rs72797476	0.89[EUR][1000 genomes]
rs72797490	1.00[EUR][1000 genomes]
rs72806318	0.87[EUR][1000 genomes]
rs72806334	0.89[EUR][1000 genomes]
rs72806949	0.89[EUR][1000 genomes]
rs72806995	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72806996	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72807000	0.89[EUR][1000 genomes]
rs72807001	0.89[EUR][1000 genomes]
rs72810732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810741	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810756	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810761	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72810771	0.87[EUR][1000 genomes]
rs72810772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72810773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72812739	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72812756	0.91[AFR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22374800-22376400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:22374800-22376600	Enhancers	Colon Smooth Muscle	Colon
3	chr10:22374800-22376600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:22374800-22376600	Enhancers	Fetal Stomach	stomach
5	chr10:22374800-22376800	Enhancers	Fetal Lung	lung
6	chr10:22375000-22376200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:22375200-22376200	Weak transcription	Placenta	Placenta
8	chr10:22375200-22376200	Weak transcription	Pancreas	Pancrea
9	chr10:22375200-22376200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:22375200-22376600	Enhancers	Adipose Nuclei	Adipose
11	chr10:22375400-22376600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:22375400-22376600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:22375400-22376600	Enhancers	HepG2	liver
14	chr10:22375400-22377000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:22375600-22376200	Enhancers	Osteobl	bone
16	chr10:22375600-22376400	Enhancers	Brain Anterior Caudate	brain
17	chr10:22375600-22376400	Enhancers	Brain Substantia Nigra	brain
18	chr10:22375600-22376800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr10:22375800-22376200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr10:22375800-22376200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:22375800-22376200	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr10:22375800-22376200	Active TSS	K562	blood
23	chr10:22375800-22376400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr10:22375800-22376400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:22375800-22376400	Flanking Active TSS	Hela-S3	cervix
26	chr10:22375800-22376600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:22375800-22376600	Enhancers	Liver	Liver
28	chr10:22375800-22376600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:22375800-22376600	Enhancers	Rectal Smooth Muscle	rectum
30	chr10:22375800-22376800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr10:22375800-22376800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr10:22375800-22381400	Weak transcription	Fetal Heart	heart
33	chr10:22376000-22376200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr10:22376000-22376400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:22376000-22376400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:22376000-22376400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:22376000-22376400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:22376000-22376400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:22376000-22376400	Flanking Active TSS	A549	lung
40	chr10:22376000-22376400	Enhancers	NHDF-Ad	bronchial
41	chr10:22376000-22376600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:22376000-22376600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:22376000-22376600	Enhancers	NHEK	skin
44	chr10:22376200-22376400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:22376200-22376400	Enhancers	Brain Angular Gyrus	brain
46	chr10:22376200-22376400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:22376200-22376400	Flanking Active TSS	K562	blood
48	chr10:22376200-22376600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr10:22376200-22376600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:22376200-22376600	Enhancers	Brain Hippocampus Middle	brain

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