Variant report

Variant	rs72804398
Chromosome Location	chr10:22116775-22116776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22116036..22118048-chr10:22170735..22173105,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11818726	0.81[EUR][1000 genomes]
rs16921919	0.91[EUR][1000 genomes]
rs41304605	0.90[EUR][1000 genomes]
rs55742770	0.90[EUR][1000 genomes]
rs55880968	0.90[EUR][1000 genomes]
rs55990219	1.00[EUR][1000 genomes]
rs67009934	0.90[EUR][1000 genomes]
rs72797462	0.90[EUR][1000 genomes]
rs72797470	0.90[EUR][1000 genomes]
rs72797476	0.90[EUR][1000 genomes]
rs72802931	0.90[EUR][1000 genomes]
rs72802956	0.90[EUR][1000 genomes]
rs72806334	0.90[EUR][1000 genomes]
rs72806949	0.90[EUR][1000 genomes]
rs72806995	0.90[EUR][1000 genomes]
rs72806996	0.90[EUR][1000 genomes]
rs72807000	0.90[EUR][1000 genomes]
rs72807001	0.90[EUR][1000 genomes]
rs7912711	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv1793816	chr10:22088054-22285371	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22074800-22123200	Weak transcription	Left Ventricle	heart
2	chr10:22100400-22122000	Weak transcription	HSMM	muscle
3	chr10:22112600-22118600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:22113000-22118400	ZNF genes & repeats	Liver	Liver
5	chr10:22113000-22119400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:22114000-22117400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:22114200-22125000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:22114400-22117600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:22114800-22121200	Weak transcription	Fetal Heart	heart
10	chr10:22115000-22118400	Weak transcription	Pancreas	Pancrea
11	chr10:22115600-22116800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr10:22115600-22117200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:22115800-22116800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:22115800-22117200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:22115800-22119600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr10:22116000-22116800	ZNF genes & repeats	Fetal Lung	lung
17	chr10:22116000-22117200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr10:22116600-22118000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:22116600-22120000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:22116600-22120000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:22116600-22120000	Weak transcription	Aorta	Aorta
22	chr10:22116600-22123200	Weak transcription	Gastric	stomach

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