Variant report

Variant	rs72802931
Chromosome Location	chr10:22025042-22025043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22017212..22020501-chr10:22023185..22027137,3	MCF-7	breast:
2	chr10:22020747..22022533-chr10:22024224..22026424,2	K562	blood:
3	chr10:22022540..22025480-chr10:22028506..22030134,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16921919	0.82[EUR][1000 genomes]
rs41304605	1.00[EUR][1000 genomes]
rs55702118	0.89[EUR][1000 genomes]
rs55742770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55789720	0.89[EUR][1000 genomes]
rs55990219	0.90[EUR][1000 genomes]
rs56328322	0.89[EUR][1000 genomes]
rs66954116	0.89[EUR][1000 genomes]
rs67009934	1.00[EUR][1000 genomes]
rs67106981	0.89[EUR][1000 genomes]
rs67626393	0.89[EUR][1000 genomes]
rs72797462	1.00[EUR][1000 genomes]
rs72797470	1.00[EUR][1000 genomes]
rs72797476	1.00[EUR][1000 genomes]
rs72797490	0.89[EUR][1000 genomes]
rs72802957	0.89[EUR][1000 genomes]
rs72802961	0.89[EUR][1000 genomes]
rs72802964	0.89[EUR][1000 genomes]
rs72804398	0.90[EUR][1000 genomes]
rs72806334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72806949	1.00[EUR][1000 genomes]
rs72806951	0.82[EUR][1000 genomes]
rs7912711	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
6	esv3374002	chr10:22005580-22026097	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22002400-22027600	Weak transcription	Psoas Muscle	Psoas
2	chr10:22003000-22027400	Weak transcription	Colonic Mucosa	Colon
3	chr10:22014200-22025400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:22014400-22025600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:22014400-22027400	Weak transcription	Hela-S3	cervix
6	chr10:22014400-22029600	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:22014600-22027600	Weak transcription	Ovary	ovary
8	chr10:22014600-22032400	Weak transcription	Small Intestine	intestine
9	chr10:22014600-22033200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:22015000-22025600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:22015000-22034200	Strong transcription	Dnd41	blood
12	chr10:22015200-22034200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:22015200-22034400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr10:22015400-22029600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:22015800-22025600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:22016800-22038800	Weak transcription	Stomach Mucosa	stomach
17	chr10:22017000-22025400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:22017000-22025400	Weak transcription	Fetal Brain Female	brain
19	chr10:22017000-22027600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:22018000-22025800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:22018200-22034400	Strong transcription	Fetal Intestine Large	intestine
22	chr10:22019200-22027800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:22019800-22026400	Strong transcription	HMEC	breast
24	chr10:22019800-22026600	Strong transcription	K562	blood
25	chr10:22019800-22034400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:22020600-22025600	Strong transcription	Fetal Thymus	thymus
27	chr10:22021200-22036000	Weak transcription	Fetal Brain Male	brain
28	chr10:22021400-22027600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:22021400-22034400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:22021600-22026200	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:22021600-22031000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:22021600-22032800	Strong transcription	HepG2	liver
33	chr10:22021600-22035000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr10:22021800-22025600	Strong transcription	Primary hematopoietic stem cells	blood
35	chr10:22021800-22029800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:22021800-22032600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:22021800-22034400	Strong transcription	Placenta	Placenta
38	chr10:22022000-22025400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:22022200-22025200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:22022200-22026000	Strong transcription	Fetal Lung	lung
41	chr10:22022400-22025600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:22022400-22026000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr10:22022400-22027200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:22022400-22031400	Strong transcription	Liver	Liver
45	chr10:22022600-22025600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:22022600-22025800	Strong transcription	Thymus	Thymus
47	chr10:22022600-22026600	Strong transcription	Brain Anterior Caudate	brain
48	chr10:22022600-22028200	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr10:22022600-22029800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:22022600-22034000	Strong transcription	Adipose Nuclei	Adipose

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