Variant report

Variant	rs72802961
Chromosome Location	chr10:22083340-22083341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22082358..22085289-chr10:22087786..22091076,3	K562	blood:
2	chr10:22076672..22080737-chr10:22081225..22085922,5	K562	blood:
3	chr10:22082723..22085289-chr10:22087786..22090780,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16921947	0.89[EUR][1000 genomes]
rs41304605	0.89[EUR][1000 genomes]
rs55702118	1.00[EUR][1000 genomes]
rs55742770	0.89[EUR][1000 genomes]
rs55789720	1.00[EUR][1000 genomes]
rs55880968	0.89[EUR][1000 genomes]
rs56328322	1.00[EUR][1000 genomes]
rs61454417	0.89[EUR][1000 genomes]
rs66867344	0.89[EUR][1000 genomes]
rs66954116	1.00[EUR][1000 genomes]
rs67009934	0.89[EUR][1000 genomes]
rs67106981	1.00[EUR][1000 genomes]
rs67626393	1.00[EUR][1000 genomes]
rs72794848	1.00[AMR][1000 genomes]
rs72797462	0.89[EUR][1000 genomes]
rs72797470	0.89[EUR][1000 genomes]
rs72797476	0.89[EUR][1000 genomes]
rs72797490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72802931	0.89[EUR][1000 genomes]
rs72802956	0.89[EUR][1000 genomes]
rs72802957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72802964	1.00[EUR][1000 genomes]
rs72804392	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72806318	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72806334	0.89[EUR][1000 genomes]
rs72806949	0.89[EUR][1000 genomes]
rs72806995	0.89[EUR][1000 genomes]
rs72806996	0.89[EUR][1000 genomes]
rs72807000	0.89[EUR][1000 genomes]
rs72807001	0.89[EUR][1000 genomes]
rs72810732	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv3389523	chr10:22074995-22097153	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22048000-22109000	Weak transcription	Ovary	ovary
2	chr10:22048400-22087400	Weak transcription	Aorta	Aorta
3	chr10:22048400-22094800	Weak transcription	Small Intestine	intestine
4	chr10:22048400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:22048800-22114000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:22049000-22086400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:22055400-22095600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:22062200-22088800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:22066000-22113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:22070800-22086800	Weak transcription	Primary B cells from cord blood	blood
11	chr10:22072000-22086600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:22072000-22086600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:22073000-22086400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:22074200-22105200	Weak transcription	Lung	lung
15	chr10:22074400-22099200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:22074600-22087000	Weak transcription	Adipose Nuclei	Adipose
17	chr10:22074800-22086200	Weak transcription	K562	blood
18	chr10:22074800-22086800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:22074800-22089800	Weak transcription	Fetal Intestine Small	intestine
20	chr10:22074800-22099000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:22074800-22100800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:22074800-22123200	Weak transcription	Left Ventricle	heart
23	chr10:22075200-22085800	Weak transcription	Liver	Liver
24	chr10:22076400-22086800	Weak transcription	Spleen	Spleen
25	chr10:22076600-22086400	Weak transcription	Pancreas	Pancrea
26	chr10:22076800-22089800	Weak transcription	Fetal Stomach	stomach
27	chr10:22077800-22086600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:22077800-22086600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:22077800-22096200	Weak transcription	Gastric	stomach
30	chr10:22078000-22096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:22079400-22085400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:22079800-22087000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:22079800-22087200	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:22081800-22089200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:22082200-22085800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:22082400-22085800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:22082800-22086000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:22082800-22086600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr10:22083000-22086000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:22083200-22084400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links