Variant report

Variant	rs67009934
Chromosome Location	chr10:22027528-22027529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22026744..22030038-chr10:22030845..22033981,3	MCF-7	breast:
2	chr10:21784689..21786713-chr10:22027315..22029220,2	K562	blood:

Variant related genes	Relation type
ENSG00000222071	Chromatin interaction
ENSG00000204682	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16921919	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41277390	0.83[ASN][1000 genomes]
rs41304605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55702118	0.89[EUR][1000 genomes]
rs55742770	1.00[EUR][1000 genomes]
rs55789720	0.89[EUR][1000 genomes]
rs55990219	0.90[EUR][1000 genomes]
rs56328322	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66572733	0.83[ASN][1000 genomes]
rs66954116	0.89[EUR][1000 genomes]
rs67106981	0.89[EUR][1000 genomes]
rs67160003	1.00[ASN][1000 genomes]
rs67626393	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72797462	1.00[EUR][1000 genomes]
rs72797470	1.00[EUR][1000 genomes]
rs72797476	1.00[EUR][1000 genomes]
rs72797490	0.89[EUR][1000 genomes]
rs72802931	1.00[EUR][1000 genomes]
rs72802956	1.00[ASN][1000 genomes]
rs72802957	0.89[EUR][1000 genomes]
rs72802961	0.89[EUR][1000 genomes]
rs72802964	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72804398	0.90[EUR][1000 genomes]
rs72806334	1.00[EUR][1000 genomes]
rs72806949	1.00[EUR][1000 genomes]
rs72806951	0.82[EUR][1000 genomes]
rs7912711	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550202	chr10:21856475-22027644	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22002400-22027600	Weak transcription	Psoas Muscle	Psoas
2	chr10:22014400-22029600	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:22014600-22027600	Weak transcription	Ovary	ovary
4	chr10:22014600-22032400	Weak transcription	Small Intestine	intestine
5	chr10:22014600-22033200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:22015000-22034200	Strong transcription	Dnd41	blood
7	chr10:22015200-22034200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:22015200-22034400	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:22015400-22029600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:22016800-22038800	Weak transcription	Stomach Mucosa	stomach
11	chr10:22017000-22027600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:22018200-22034400	Strong transcription	Fetal Intestine Large	intestine
13	chr10:22019200-22027800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:22019800-22034400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:22021200-22036000	Weak transcription	Fetal Brain Male	brain
16	chr10:22021400-22027600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:22021400-22034400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:22021600-22031000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:22021600-22032800	Strong transcription	HepG2	liver
20	chr10:22021600-22035000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr10:22021800-22029800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:22021800-22032600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:22021800-22034400	Strong transcription	Placenta	Placenta
24	chr10:22022400-22031400	Strong transcription	Liver	Liver
25	chr10:22022600-22028200	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr10:22022600-22029800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:22022600-22034000	Strong transcription	Adipose Nuclei	Adipose
28	chr10:22022600-22034400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:22022600-22034400	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr10:22022600-22034400	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr10:22022800-22031600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:22022800-22035400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:22022800-22037800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr10:22023000-22027600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:22023000-22033800	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr10:22023000-22034200	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:22023000-22034400	Strong transcription	A549	lung
38	chr10:22023000-22046200	Weak transcription	Right Atrium	heart
39	chr10:22023200-22030000	Weak transcription	Brain Germinal Matrix	brain
40	chr10:22023200-22030600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:22023200-22030800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:22023200-22034000	Strong transcription	Osteobl	bone
43	chr10:22023200-22039800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:22023600-22030400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:22023600-22035400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:22023800-22034400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:22023800-22036600	Strong transcription	Fetal Muscle Leg	muscle
48	chr10:22024000-22029400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:22024000-22030200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr10:22024200-22028000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links