Variant report

Variant	rs41281206
Chromosome Location	chr9:93264023-93264024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12682759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12682906	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12685637	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56891727	0.81[AFR][1000 genomes]
rs57309876	1.00[AMR][1000 genomes]
rs58297912	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59475005	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60703181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60852050	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61012080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61263953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61559611	1.00[AMR][1000 genomes]
rs72744716	0.81[AFR][1000 genomes]
rs72744720	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv482748	chr9:93123377-93279526	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv893565	chr9:93130796-93392332	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv614853	chr9:93183404-93266508	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv614854	chr9:93209923-93266508	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv893566	chr9:93209923-93439259	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93263000-93264800	Enhancers	H1 Cell Line	embryonic stem cell
2	chr9:93263200-93265000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:93263200-93265000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:93263600-93264400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:93263600-93264400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:93263600-93264600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:93263600-93265000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:93263600-93265000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:93263800-93264400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:93263800-93264400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:93263800-93264400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr9:93263800-93264600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:93263800-93264600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr9:93263800-93264800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:93263800-93265000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:93263800-93265200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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