Variant report

Variant	rs60703181
Chromosome Location	chr9:93222107-93222108
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93211161..93212918-chr9:93221258..93222920,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12682759	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12682906	1.00[AMR][1000 genomes]
rs41281206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56754390	0.83[AFR][1000 genomes]
rs56891727	0.90[AFR][1000 genomes]
rs56976986	0.83[AFR][1000 genomes]
rs57309876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57630733	0.83[AFR][1000 genomes]
rs58034456	0.83[AFR][1000 genomes]
rs58174490	0.83[AFR][1000 genomes]
rs58297912	1.00[AMR][1000 genomes]
rs58344378	0.83[AFR][1000 genomes]
rs58966490	0.83[AFR][1000 genomes]
rs59475005	1.00[AMR][1000 genomes]
rs59900627	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60697894	0.83[AFR][1000 genomes]
rs60852050	1.00[AMR][1000 genomes]
rs61012080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61263953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61559611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72742980	0.83[AFR][1000 genomes]
rs72742990	0.83[AFR][1000 genomes]
rs72744716	0.90[AFR][1000 genomes]
rs72744720	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv482748	chr9:93123377-93279526	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv893565	chr9:93130796-93392332	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv614853	chr9:93183404-93266508	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv614854	chr9:93209923-93266508	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv893566	chr9:93209923-93439259	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93206400-93222600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:93214200-93222400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:93220800-93222600	Enhancers	GM12878-XiMat	blood
4	chr9:93221000-93222400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:93221200-93222200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:93221200-93222400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:93221200-93222400	Weak transcription	Fetal Intestine Large	intestine
8	chr9:93221400-93222400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:93221400-93222400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:93221800-93222600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:93222000-93223200	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links