Variant report

Variant	rs58966490
Chromosome Location	chr9:93191507-93191508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93190984..93193715-chr9:93194664..93197177,2	K562	blood:

Variant related genes	Relation type
ENSG00000231107	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56754390	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56891727	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56976986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57630733	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58034456	1.00[AFR][1000 genomes]
rs58174490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58344378	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58620417	0.83[AMR][1000 genomes]
rs58863991	0.91[AFR][1000 genomes]
rs59951030	0.84[AFR][1000 genomes]
rs60099931	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60697894	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60703181	0.83[AFR][1000 genomes]
rs61012080	0.83[AFR][1000 genomes]
rs61068532	0.84[AFR][1000 genomes]
rs61753925	0.84[AFR][1000 genomes]
rs72742953	0.83[AMR][1000 genomes]
rs72742978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742995	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72744716	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72744720	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv482748	chr9:93123377-93279526	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv893565	chr9:93130796-93392332	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3483705	chr9:93162382-93194535	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3483706	chr9:93162396-93194531	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv614853	chr9:93183404-93266508	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93181200-93195200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:93182000-93195000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:93182200-93194800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:93182200-93195000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:93186200-93195200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:93186400-93195000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:93186400-93195200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:93186600-93195200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:93186600-93195400	Weak transcription	Lung	lung
10	chr9:93189600-93192000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:93191400-93195400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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